Move digger reproduction env to tools/reproduction/

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- Moved bttoxin_digger_v5_repro to tools/reproduction/bttoxin_digger
- Updated docker-compose.yml to point to the new location
- This declutters the root directory while preserving the reproduction environment

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This commit is contained in:

zly

2026-01-17 13:11:16 +08:00

parent 33f44e2df0

commit 166af50219

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bttoxin_digger_v5_repro/AGENTS.md → tools/reproduction/bttoxin_digger/AGENTS.md

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bttoxin_digger_v5_repro/README.md → tools/reproduction/bttoxin_digger/README.md

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bttoxin_digger_v5_repro/README_CN.md → tools/reproduction/bttoxin_digger/README_CN.md

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bttoxin_digger_v5_repro/docker-compose.yml → tools/reproduction/bttoxin_digger/docker-compose.yml

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bttoxin_digger_v5_repro/docker/Dockerfile → tools/reproduction/bttoxin_digger/docker/Dockerfile

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bttoxin_digger_v5_repro/examples/COMPARE_REPORT.md → tools/reproduction/bttoxin_digger/examples/COMPARE_REPORT.md

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bttoxin_digger_v5_repro/examples/inputs/97-27.fna → tools/reproduction/bttoxin_digger/examples/inputs/97-27.fna

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bttoxin_digger_v5_repro/examples/inputs/C15.fna → tools/reproduction/bttoxin_digger/examples/inputs/C15.fna

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bttoxin_digger_v5_repro/external_dbs/bt_toxin/db/bt_toxin.pdb → tools/reproduction/bttoxin_digger/external_dbs/bt_toxin/db/bt_toxin.pdb

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bttoxin_digger_v5_repro/external_dbs/bt_toxin/db/bt_toxin.phr → tools/reproduction/bttoxin_digger/external_dbs/bt_toxin/db/bt_toxin.phr

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bttoxin_digger_v5_repro/external_dbs/bt_toxin/db/bt_toxin.pin → tools/reproduction/bttoxin_digger/external_dbs/bt_toxin/db/bt_toxin.pin

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bttoxin_digger_v5_repro/external_dbs/bt_toxin/db/bt_toxin.pjs → tools/reproduction/bttoxin_digger/external_dbs/bt_toxin/db/bt_toxin.pjs

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bttoxin_digger_v5_repro/external_dbs/bt_toxin/db/bt_toxin.pot → tools/reproduction/bttoxin_digger/external_dbs/bt_toxin/db/bt_toxin.pot

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bttoxin_digger_v5_repro/external_dbs/bt_toxin/db/bt_toxin.psq → tools/reproduction/bttoxin_digger/external_dbs/bt_toxin/db/bt_toxin.psq

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bttoxin_digger_v5_repro/external_dbs/bt_toxin/db/bt_toxin.ptf → tools/reproduction/bttoxin_digger/external_dbs/bt_toxin/db/bt_toxin.ptf

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bttoxin_digger_v5_repro/external_dbs/bt_toxin/db/bt_toxin.pto → tools/reproduction/bttoxin_digger/external_dbs/bt_toxin/db/bt_toxin.pto

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bttoxin_digger_v5_repro/external_dbs/bt_toxin/db/db_update.tar.gz → tools/reproduction/bttoxin_digger/external_dbs/bt_toxin/db/db_update.tar.gz

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bttoxin_digger_v5_repro/external_dbs/bt_toxin/db/old/bt_toxin.phr → tools/reproduction/bttoxin_digger/external_dbs/bt_toxin/db/old/bt_toxin.phr

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bttoxin_digger_v5_repro/external_dbs/bt_toxin/db/old/bt_toxin.pin → tools/reproduction/bttoxin_digger/external_dbs/bt_toxin/db/old/bt_toxin.pin

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bttoxin_digger_v5_repro/external_dbs/bt_toxin/db/old/bt_toxin.psq → tools/reproduction/bttoxin_digger/external_dbs/bt_toxin/db/old/bt_toxin.psq

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bttoxin_digger_v5_repro/external_dbs/bt_toxin/db/old/db_update-20221208.tar.gz → tools/reproduction/bttoxin_digger/external_dbs/bt_toxin/db/old/db_update-20221208.tar.gz

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bttoxin_digger_v5_repro/external_dbs/bt_toxin/seq/Bacterial Pesticidal Protein Database20200730.pdf → tools/reproduction/bttoxin_digger/external_dbs/bt_toxin/seq/Bacterial Pesticidal Protein Database20200730.pdf

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bttoxin_digger_v5_repro/external_dbs/bt_toxin/seq/bt_toxin20200321 → tools/reproduction/bttoxin_digger/external_dbs/bt_toxin/seq/bt_toxin20200321

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bttoxin_digger_v5_repro/external_dbs/bt_toxin/seq/bt_toxin20200401 → tools/reproduction/bttoxin_digger/external_dbs/bt_toxin/seq/bt_toxin20200401

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bttoxin_digger_v5_repro/external_dbs/bt_toxin/seq/bt_toxin20200730.txt → tools/reproduction/bttoxin_digger/external_dbs/bt_toxin/seq/bt_toxin20200730.txt

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bttoxin_digger_v5_repro/external_dbs/bt_toxin/seq/bt_toxin20210607.fas → tools/reproduction/bttoxin_digger/external_dbs/bt_toxin/seq/bt_toxin20210607.fas

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bttoxin_digger_v5_repro/external_dbs/bt_toxin/seq/bt_toxin20210802.fas → tools/reproduction/bttoxin_digger/external_dbs/bt_toxin/seq/bt_toxin20210802.fas

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bttoxin_digger_v5_repro/external_dbs/bt_toxin/seq/bt_toxin20211011.fas → tools/reproduction/bttoxin_digger/external_dbs/bt_toxin/seq/bt_toxin20211011.fas

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bttoxin_digger_v5_repro/external_dbs/bt_toxin/seq/bt_toxin20211227.fas → tools/reproduction/bttoxin_digger/external_dbs/bt_toxin/seq/bt_toxin20211227.fas

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bttoxin_digger_v5_repro/external_dbs/bt_toxin/seq/bt_toxin20220128.fas → tools/reproduction/bttoxin_digger/external_dbs/bt_toxin/seq/bt_toxin20220128.fas

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bttoxin_digger_v5_repro/external_dbs/bt_toxin/seq/bt_toxin20220609.fas → tools/reproduction/bttoxin_digger/external_dbs/bt_toxin/seq/bt_toxin20220609.fas

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bttoxin_digger_v5_repro/external_dbs/bt_toxin/seq/bt_toxin20221208.fas → tools/reproduction/bttoxin_digger/external_dbs/bt_toxin/seq/bt_toxin20221208.fas

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bttoxin_digger_v5_repro/external_dbs/bt_toxin/seq/bt_toxin20251104.fas → tools/reproduction/bttoxin_digger/external_dbs/bt_toxin/seq/bt_toxin20251104.fas

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bttoxin_digger_v5_repro/external_dbs/bt_toxin/seq/updateDB.py → tools/reproduction/bttoxin_digger/external_dbs/bt_toxin/seq/updateDB.py

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bttoxin_digger_v5_repro/pixi.lock → tools/reproduction/bttoxin_digger/pixi.lock

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bttoxin_digger_v5_repro/pixi.toml → tools/reproduction/bttoxin_digger/pixi.toml

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bttoxin_digger_v5_repro/run_digger_pixi.sh → tools/reproduction/bttoxin_digger/run_digger_pixi.sh