lingyuzeng/bttoxin-pipeline

Files

zly 166af50219 Move digger reproduction env to tools/reproduction/

- Moved bttoxin_digger_v5_repro to tools/reproduction/bttoxin_digger
- Updated docker-compose.yml to point to the new location
- This declutters the root directory while preserving the reproduction environment

2026-01-17 13:11:16 +08:00

1.4 KiB

Raw Blame History

BtToxin_Digger pixi vs docker comparison (examples)

Inputs

Pixi C15: runs/bttoxin_digger_v5_repro/examples/C15_pixi_v5/Results/Toxins/All_Toxins.txt
Docker C15: runs/bttoxin_digger_v5_repro/examples/C15_docker/digger/Results/Toxins/All_Toxins.txt
Pixi HAN055: runs/bttoxin_digger_v5_repro/examples/HAN055_pixi_v5_clean/Results/Toxins/All_Toxins.txt
Docker HAN055: runs/bttoxin_digger_v5_repro/examples/HAN055_docker/digger/Results/Toxins/All_Toxins.txt

Diff files:

runs/bttoxin_digger_v5_repro/examples/diffs/C15_docker_vs_pixi_v5.diff
runs/bttoxin_digger_v5_repro/examples/diffs/HAN055_docker_vs_pixi_v5_clean.diff

C15 (docker vs pixi v5)

Row counts: 24 vs 24
Hit_id set: identical
Differences: 6 rows differ (4 BLAST E-values, 2 SVM flags)

Protein_id          Field            docker_value  pixi_value
NZ_CP021436.1_06204 Evalue of blast  1e-35         2e-35
NZ_CP021436.1_06727 Evalue of blast  9e-33         1e-32
NZ_CP021436.1_12182 Evalue of blast  7e-60         8e-60
NZ_CP021438.1_00072 SVM              NO            YES
NZ_CP021438.1_00163 Evalue of blast  3e-52         4e-52
NZ_CP021439.1_00043 SVM              YES           NO

HAN055 (docker vs pixi v5 clean)

Row counts: 24 vs 24
Hit_id set: identical
Differences: two rows differ only in the SVM flag

Protein_id        Hit_id    docker_SVM  pixi_SVM
CP001910.1_00155  Cry2Aa22  YES         NO
CP001910.1_00475  Cry1Aa3   NO          YES