lingyuzeng/analysis_pdb

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analysis_pdb

install environment

micromamba create -n modeller modeller biopython pymol-open-source biopandas requests ipython ipykernel -y -c conda-forge -c salilab
# modeller注册码：MODELIRANJE (<conda_env>//lib/modeller-10.4/modlib/modeller/config.py)

modeller注册码：`MODELIRANJE``

test

cp pdb_test/5isz.pdb pdb_gjm/
gmx_mpi pdb2gmx -f 5isz.pdb -o 5isz.gro -ff amber99sb-ildn -water tip3p -ignh -p topol.top