BtToxin Pipeline
Automated Bacillus thuringiensis toxin mining system with CI/CD integration.
Quick Start
Prerequisites
- Docker / Podman
- Python 3.10+
- Node.js 18+
Development Setup
# 1. Clone and setup
git clone <your-repo>
cd bttoxin-pipeline
# 2. Install dependencies
cd backend && pip install -r requirements.txt
cd ../frontend && npm install
# 3. Start services
docker compose -f config/docker-compose.yml up -d
# 4. Run backend
cd backend
uvicorn app.main:app --reload
# 5. Run frontend
cd frontend
npm run dev
Architecture
Frontend (Vue 3) → Backend (FastAPI) → Celery → Docker (BtToxin_Digger) ↓ PostgreSQL + Redis ↓ S3/MinIO
Documentation
License
MIT License