c75c85c53b
- Backend: Refactored tasks.py to directly invoke run_single_fna_pipeline.py for consistency. - Backend: Changed output format to ZIP and added auto-cleanup of intermediate files. - Backend: Fixed language parameter passing in API and tasks. - Frontend: Removed CRISPR Fusion UI elements from Submit and Monitor views. - Frontend: Implemented simulated progress bar for better UX. - Frontend: Restored One-click load button and added result file structure documentation. - Docker: Fixed critical Restarting loop by removing incorrect image directive in docker-compose.yml. - Docker: Optimized Dockerfile to correct .pixi environment path issues and prevent accidental deletion of frontend assets.
114 lines
3.5 KiB
YAML
114 lines
3.5 KiB
YAML
# Docker Compose configuration for BtToxin Pipeline
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# This is the unified production configuration.
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# Key features:
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# 1. Uses Traefik for routing (no exposed ports on host)
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# 2. Mounts existing data volumes from the original 'docker' project
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# 3. Fixes PYTHONPATH issues for Celery workers
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services:
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postgres:
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image: docker.m.daocloud.io/library/postgres:15-alpine
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container_name: bttoxin-postgres
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restart: unless-stopped
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environment:
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# Unified credentials matching the original 'docker' project
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- POSTGRES_USER=bttoxin
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- POSTGRES_PASSWORD=bttoxin_password
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- POSTGRES_DB=bttoxin_db
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volumes:
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- postgres_data:/var/lib/postgresql/data
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networks:
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- frontend
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redis:
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image: docker.m.daocloud.io/library/redis:7-alpine
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container_name: bttoxin-redis
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restart: unless-stopped
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volumes:
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- redis_data:/data
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networks:
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- frontend
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bttoxin:
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build:
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context: .
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dockerfile: docker/dockerfiles/Dockerfile.traefik
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container_name: bttoxin-pipeline
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# No ports section - Traefik will handle routing via the container network
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volumes:
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- ./jobs:/app/jobs
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environment:
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- PYTHONPATH=/app:/app/backend
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- JOBS_DIR=/app/jobs
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- UPLOAD_DIR=/app/jobs/uploads
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- RESULTS_DIR=/app/jobs/results
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- DATABASE_URL=postgresql://bttoxin:bttoxin_password@bttoxin-postgres:5432/bttoxin_db
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- REDIS_URL=redis://bttoxin-redis:6379/0
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- CELERY_BROKER_URL=redis://redis:6379/0
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- CELERY_RESULT_BACKEND=redis://redis:6379/0
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restart: unless-stopped
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depends_on:
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- postgres
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- redis
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networks:
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- frontend
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labels:
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# Enable Traefik for this container
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- "traefik.enable=true"
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- "traefik.docker.network=frontend"
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# HTTP Router (redirect to HTTPS)
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- "traefik.http.routers.bttoxin.rule=Host(`bttiaw.hzau.edu.cn`)"
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- "traefik.http.routers.bttoxin.entrypoints=web"
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- "traefik.http.routers.bttoxin.middlewares=redirect-to-https"
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# HTTPS Router
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- "traefik.http.routers.bttoxin-secure.rule=Host(`bttiaw.hzau.edu.cn`)"
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- "traefik.http.routers.bttoxin-secure.entrypoints=websecure"
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- "traefik.http.routers.bttoxin-secure.tls=true"
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- "traefik.http.routers.bttoxin-secure.tls.certresolver=myresolver"
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# Service configuration
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- "traefik.http.services.bttoxin.loadbalancer.server.port=8000"
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# TLS redirect middleware
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- "traefik.http.middlewares.redirect-to-https.redirectscheme.scheme=https"
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- "traefik.http.middlewares.redirect-to-https.redirectscheme.permanent=true"
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worker:
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build:
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context: .
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dockerfile: docker/dockerfiles/Dockerfile.traefik
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container_name: bttoxin-worker
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volumes:
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- ./jobs:/app/jobs
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environment:
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- PYTHONPATH=/app:/app/backend
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- JOBS_DIR=/app/jobs
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- UPLOAD_DIR=/app/jobs/uploads
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- RESULTS_DIR=/app/jobs/results
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- DATABASE_URL=postgresql://bttoxin:bttoxin_password@bttoxin-postgres:5432/bttoxin_db
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- REDIS_URL=redis://bttoxin-redis:6379/0
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- CELERY_BROKER_URL=redis://redis:6379/0
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- CELERY_RESULT_BACKEND=redis://redis:6379/0
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restart: unless-stopped
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depends_on:
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- postgres
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- redis
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networks:
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- frontend
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command: celery -A backend.app.core.celery_app worker --loglevel=info
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networks:
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frontend:
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external: true
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volumes:
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# Mount the existing volumes from the 'docker' project
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postgres_data:
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external: false
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name: bttoxin_postgres_data_v2
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redis_data:
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external: true
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name: docker_redis_data
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