Files
bttoxin-pipeline/docker/docker-compose.yml
zly 700bdb8307 feat(digger): containerize BtToxin_Digger with v5 database integration
- Added Dockerfile and docker-compose.yml for BtToxin_Digger
- Integrated external v5 BLAST database into the container image
- Updated main docker-compose.yml to include the digger service
- Updated documentation with database update instructions
2026-01-17 12:14:39 +08:00

147 lines
3.8 KiB
YAML

version: '3.8'
services:
postgres:
image: docker.m.daocloud.io/library/postgres:15-alpine
container_name: bttoxin_postgres
environment:
POSTGRES_USER: bttoxin
POSTGRES_PASSWORD: bttoxin_password
POSTGRES_DB: bttoxin_db
volumes:
- postgres_data:/var/lib/postgresql/data
ports:
- "5434:5432"
healthcheck:
test: ["CMD-SHELL", "pg_isready -U bttoxin"]
interval: 10s
timeout: 5s
retries: 5
restart: unless-stopped
redis:
image: docker.m.daocloud.io/library/redis:7-alpine
container_name: bttoxin_redis
command: redis-server --appendonly yes
volumes:
- redis_data:/data
ports:
- "6380:6379"
healthcheck:
test: ["CMD", "redis-cli", "ping"]
interval: 10s
timeout: 5s
retries: 5
restart: unless-stopped
api:
build:
context: ../backend
dockerfile: Dockerfile
container_name: bttoxin_api
command: uvicorn app.main:app --host 0.0.0.0 --port 8000 --reload
volumes:
- ../backend:/app
- ../data:/data
- ../Data:/Data
ports:
- "8002:8000"
environment:
- DATABASE_URL=postgresql://bttoxin:bttoxin_password@postgres:5432/bttoxin_db
- REDIS_URL=redis://redis:6379/0
- CELERY_BROKER_URL=redis://redis:6379/0
- CELERY_RESULT_BACKEND=redis://redis:6379/0
- WORKSPACE_BASE_PATH=/data/jobs
- DEBUG=True
- PYTHONPATH=/app
depends_on:
postgres:
condition: service_healthy
redis:
condition: service_healthy
restart: unless-stopped
worker:
build:
context: ../backend
dockerfile: Dockerfile
container_name: bttoxin_worker
command: celery -A app.core.celery_app worker --loglevel=info --concurrency=2
volumes:
- ../backend:/app
- ../data:/data
- /var/run/docker.sock:/var/run/docker.sock
environment:
- DATABASE_URL=postgresql://bttoxin:bttoxin_password@postgres:5432/bttoxin_db
- REDIS_URL=redis://redis:6379/0
- CELERY_BROKER_URL=redis://redis:6379/0
- CELERY_RESULT_BACKEND=redis://redis:6379/0
- WORKSPACE_BASE_PATH=/data/jobs
- C_FORCE_ROOT=true
- PYTHONPATH=/app
depends_on:
- postgres
- redis
restart: unless-stopped
beat:
build:
context: ../backend
dockerfile: Dockerfile
container_name: bttoxin_beat
command: celery -A app.core.celery_app beat --loglevel=info
volumes:
- ../backend:/app
environment:
- REDIS_URL=redis://redis:6379/0
- CELERY_BROKER_URL=redis://redis:6379/0
- CELERY_RESULT_BACKEND=redis://redis:6379/0
- PYTHONPATH=/app
depends_on:
- redis
restart: unless-stopped
flower:
build:
context: ../backend
dockerfile: Dockerfile
container_name: bttoxin_flower
command: celery -A app.core.celery_app flower --port=5555
ports:
- "5556:5555"
environment:
- REDIS_URL=redis://redis:6379/0
- CELERY_BROKER_URL=redis://redis:6379/0
- CELERY_RESULT_BACKEND=redis://redis:6379/0
- PYTHONPATH=/app
depends_on:
- redis
restart: unless-stopped
frontend:
build:
context: ..
dockerfile: docker/frontend/Dockerfile
container_name: bttoxin_frontend
ports:
- "3002:80"
depends_on:
- api
restart: unless-stopped
# Digger 任务 Worker - 使用 bttoxin_digger_v5_repro 的 pixi 环境
digger:
build:
context: ../bttoxin_digger_v5_repro
dockerfile: docker/Dockerfile
container_name: bttoxin_digger
volumes:
- ../data:/data
- ../Data:/Data
# 保持容器运行,以便通过 docker exec 调用,或者避免无限重启循环
command: tail -f /dev/null
restart: unless-stopped
volumes:
postgres_data:
redis_data: