BtToxin Pipeline

Automated Bacillus thuringiensis toxin mining system with CI/CD integration.

Quick Start (单机部署)

uv .venv

uv venv --managed-python -p 3.12 --seed .venv
uv pip install backend/requirements.txt

Prerequisites

Docker / Podman
Python 3.10+
Node.js 18+

Development Setup

# 1. Clone and setup
git clone <your-repo>
cd bttoxin-pipeline

# 2. 使用 Makefile 初始化与启动（单机）
make setup
make start

# 3. 初始化数据库（创建表）
make db-init

# 4. 访问服务
# API:     http://localhost:8000/docs
# Flower:  http://localhost:5555
# Frontend:http://localhost:3000

# (可选) 本地开发
# Backend: uvicorn app.main:app --reload
# Frontend: npm run dev

Architecture

Nginx (Reverse Proxy) ├── Frontend (Vue 3 Static) └── Backend (FastAPI + Swagger) ├── PostgreSQL (SQLModel via SQLAlchemy) ├── Redis (Broker/Result) ├── Celery (Worker/Beat + Flower) └── Docker Engine (BtToxin_Digger)

Documentation

API 文档: 浏览器打开 http://localhost:8000/docs
单机编排: docker/docker-compose.yml（唯一来源）
环境变量示例: backend/.env.example
常用命令: make help

License

MIT License

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