# BtToxin Pipeline

Automated Bacillus thuringiensis toxin mining system with CI/CD integration.

## Quick Start (单机部署)

### uv .venv

```bash
uv venv --managed-python -p 3.12 --seed .venv
uv pip install backend/requirements.txt
```

### Prerequisites

- Docker / Podman
- Python 3.10+
- Node.js 18+

### Development Setup
```bash
# 1. Clone and setup
git clone <your-repo>
cd bttoxin-pipeline

# 2. 使用 Makefile 初始化与启动（单机）
make setup
make start

# 3. 初始化数据库（创建表）
make db-init

# 4. 访问服务
# API:     http://localhost:8000/docs
# Flower:  http://localhost:5555
# Frontend:http://localhost:3000

# (可选) 本地开发
# Backend: uvicorn app.main:app --reload
# Frontend: npm run dev
```

## Architecture

Nginx (Reverse Proxy)
  ├── Frontend (Vue 3 Static)
  └── Backend (FastAPI + Swagger)
      ├── PostgreSQL (SQLModel via SQLAlchemy)
      ├── Redis (Broker/Result)
      ├── Celery (Worker/Beat + Flower)
      └── Docker Engine (BtToxin_Digger)

## Documentation

- API 文档: 浏览器打开 `http://localhost:8000/docs`
- 单机编排: `docker/docker-compose.yml`（唯一来源）
- 环境变量示例: `backend/.env.example`
- 常用命令: `make help`

## License

MIT License