import pytest from rdkit import Chem from macro_lactone_toolkit import ( AmbiguousMacrolactoneError, MacroLactoneAnalyzer, MacrolactoneDetectionError, MacrolactoneFragmenter, ) from .helpers import build_ambiguous_smiles, build_macrolactone @pytest.mark.parametrize("ring_size", [12, 14, 16, 20]) def test_analyzer_detects_supported_ring_sizes(ring_size: int): built = build_macrolactone(ring_size) analyzer = MacroLactoneAnalyzer() assert analyzer.get_valid_ring_sizes(built.smiles) == [ring_size] def test_analyzer_rejects_non_lactone_macrocycle(): analyzer = MacroLactoneAnalyzer() assert analyzer.get_valid_ring_sizes("C1CCCCCCCCCCC1") == [] def test_fragmenter_auto_numbers_ring_with_expected_positions(): built = build_macrolactone(16, {5: "methyl"}) result = MacrolactoneFragmenter().number_molecule(built.mol) assert result.ring_size == 16 assert result.position_to_atom == built.position_to_atom assert set(result.position_to_atom) == set(range(1, 17)) assert result.atom_to_position == { atom_idx: position for position, atom_idx in built.position_to_atom.items() } carbonyl_atom = built.mol.GetAtomWithIdx(result.position_to_atom[1]) assert carbonyl_atom.GetSymbol() == "C" assert any( bond.GetBondType() == Chem.BondType.DOUBLE and bond.GetOtherAtom(carbonyl_atom).GetSymbol() == "O" for bond in carbonyl_atom.GetBonds() ) ester_oxygen = built.mol.GetAtomWithIdx(result.position_to_atom[2]) assert ester_oxygen.GetSymbol() == "O" def test_fragmenter_requires_explicit_ring_size_for_ambiguous_molecule(): ambiguous_smiles = build_ambiguous_smiles() with pytest.raises(AmbiguousMacrolactoneError): MacrolactoneFragmenter().number_molecule(ambiguous_smiles) def test_fragmenter_raises_for_missing_macrolactone(): with pytest.raises(MacrolactoneDetectionError): MacrolactoneFragmenter().number_molecule("CCO") def test_explicit_ring_size_selects_requested_ring(): built = build_macrolactone(14) result = MacrolactoneFragmenter(ring_size=14).number_molecule(built.smiles) assert result.ring_size == 14 def test_explicit_ring_size_rejects_wrong_ring(): built = build_macrolactone(12) with pytest.raises(MacrolactoneDetectionError): MacrolactoneFragmenter(ring_size=16).number_molecule(built.smiles)