feat(numbering): publish canonical numbering API

Add a public numbering module and route fragmenting, validation,
and scaffold preparation through the canonical numbering entry.

Rewrite the repository entry docs around the fixed numbering
contract, add MkDocs landing pages, and document the mirror
mapping used for medicinal-chemistry comparisons.

Also refresh the validation analysis reports to explain the
canonical-versus-mirrored numbering relationship.
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# 开发者指南
这里给维护者看:项目结构、入口和约束。
## 先看什么
- [项目结构](project-structure.md)
- 仓库根目录的 `AGENTS.md` 是唯一权威 agent 入口
## 维护原则
- 入口文档只保留真实存在、持续维护的页面。
- 编号规则只使用 canonical numbering。
- 不引入 `clockwise` / `anticlockwise` 参数。
## 适合继续往下看的内容
- 如果你在找包和脚本分别负责什么,去 [project-structure.md](project-structure.md)
- 如果你在找 agent 约束,直接查看仓库根目录 `AGENTS.md`