hotwa
68f171ad1d
- Add src/splicing/ module with scaffold_prep, fragment_prep, and engine - Add tylosin_splicer.py entry script - Add unit tests for splicing components Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
40 lines
1.2 KiB
Python
40 lines
1.2 KiB
Python
import sys
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import os
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from pathlib import Path
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# Add SIME to path
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SIME_PATH = "/home/zly/project/SIME"
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if SIME_PATH not in sys.path:
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sys.path.append(SIME_PATH)
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# Add project root to path so we can import 'src'
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PROJECT_ROOT = str(Path(__file__).parent.parent)
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if PROJECT_ROOT not in sys.path:
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sys.path.append(PROJECT_ROOT)
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def test_imports():
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"""Verify that we can import from both local project and SIME."""
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print(f"sys.path: {sys.path}")
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# 1. Test local import from src
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try:
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# Correct function name based on file inspection
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from src.ring_numbering import assign_ring_numbering
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assert callable(assign_ring_numbering)
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print("Successfully imported src.ring_numbering.assign_ring_numbering")
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except ImportError as e:
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print(f"Failed to import src.ring_numbering: {e}")
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raise
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# 2. Test SIME import
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try:
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from utils.mole_predictor import ParallelBroadSpectrumPredictor
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assert ParallelBroadSpectrumPredictor is not None
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print("Successfully imported ParallelBroadSpectrumPredictor from utils.mole_predictor")
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except ImportError as e:
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print(f"Failed to import from SIME: {e}")
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raise
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if __name__ == "__main__":
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test_imports()
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