feat(validation): enforce single-anchor fragments

- skip fused/shared/multi-anchor side systems during extraction
- add fragment library schema and fragment_library.csv export
- make scaffold prep strict for non-spliceable positions
This commit is contained in:
2026-03-19 14:20:32 +08:00
parent 07ba27be2b
commit 46a438dd36
10 changed files with 383 additions and 21 deletions

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@@ -5,7 +5,7 @@ from macro_lactone_toolkit import MacrolactoneFragmenter
from macro_lactone_toolkit.splicing.engine import splice_molecule
from macro_lactone_toolkit.splicing.scaffold_prep import prepare_macrolactone_scaffold
from .helpers import build_macrolactone, canonicalize
from .helpers import build_macrolactone, build_macrolactone_with_fused_side_ring, canonicalize
def test_splice_benzene_methyl():
@@ -49,3 +49,14 @@ def test_prepare_scaffold_and_reassemble_fragment():
product = splice_molecule(scaffold, Chem.MolFromSmiles(fragment.fragment_smiles_labeled), position=5)
assert canonicalize(product) == canonicalize(built.mol)
def test_prepare_scaffold_rejects_position_without_single_anchor_fragment():
built = build_macrolactone_with_fused_side_ring(side_chains={10: "methyl"})
with pytest.raises(ValueError, match="Position 5 does not contain a single-anchor fragmentable side chain"):
prepare_macrolactone_scaffold(
built.smiles,
positions=[5],
ring_size=16,
)