后端初始化结构

web/ws/backend/app/api/v1/endpoints/analysis.py

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+"""
+智能分析 API
+"""
+from typing import Optional
+from fastapi import APIRouter, BackgroundTasks, HTTPException
+from pydantic import BaseModel
+
+router = APIRouter()
+
+
+class QuestionRequest(BaseModel):
+    """智能问答请求"""
+    question: str
+    context: Optional[str] = None
+
+
+class GeneMiningRequest(BaseModel):
+    """基因挖掘请求"""
+    sequence: str
+    algorithm: str = "blast"
+    parameters: Optional[dict] = None
+
+
+class StrainEvaluationRequest(BaseModel):
+    """菌株评估请求"""
+    strain_id: str
+    evaluation_type: str  # growth/resistance/etc
+
+
+@router.post("/qa")
+async def intelligent_qa(request: QuestionRequest):
+    """
+    智能问答
+    
+    基于知识图谱的智能问答系统
+    """
+    # TODO: 集成 AI 模型进行问答
+    return {
+        "question": request.question,
+        "answer": "This is a placeholder answer. AI integration pending.",
+        "confidence": 0.0
+    }
+
+
+@router.post("/gene-mining")
+async def gene_mining(
+    background_tasks: BackgroundTasks,
+    request: GeneMiningRequest
+):
+    """
+    基因挖掘
+    
+    通过序列比对等方法挖掘功能基因
+    """
+    # TODO: 实现基因挖掘算法
+    # background_tasks.add_task(run_gene_mining, request)
+    
+    return {
+        "status": "processing",
+        "task_id": "task_123",
+        "message": "Gene mining task started"
+    }
+
+
+@router.post("/strain-evaluation")
+async def strain_evaluation(
+    background_tasks: BackgroundTasks,
+    request: StrainEvaluationRequest
+):
+    """
+    菌株评估
+    
+    评估菌株的各项指标和应用潜力
+    """
+    # TODO: 实现菌株评估逻辑
+    return {
+        "status": "processing",
+        "task_id": "task_456",
+        "message": "Strain evaluation started"
+    }
+
+
+@router.get("/knowledge-graph")
+async def get_knowledge_graph(
+    entity: Optional[str] = None,
+    relationship: Optional[str] = None,
+):
+    """
+    知识图谱查询
+    
+    查询微生物知识图谱
+    """
+    # TODO: 实现知识图谱查询
+    return {
+        "nodes": [],
+        "edges": [],
+        "message": "Knowledge graph feature pending"
+    }
+
+
+@router.get("/task/{task_id}")
+async def get_analysis_task_status(task_id: str):
+    """
+    查询分析任务状态
+    """
+    # TODO: 从数据库或缓存查询任务状态
+    return {
+        "task_id": task_id,
+        "status": "completed",
+        "progress": 100,
+        "result": None
+    }

web/ws/backend/app/api/v1/endpoints/genes.py

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+"""
+基因资源 API
+"""
+from typing import List, Optional
+from fastapi import APIRouter, Query, HTTPException
+
+router = APIRouter()
+
+
+@router.get("/")
+async def get_genes(
+    skip: int = Query(0, ge=0),
+    limit: int = Query(20, ge=1, le=100),
+    function_type: Optional[str] = None,
+    search: Optional[str] = None,
+):
+    """
+    获取基因列表
+    
+    - **skip**: 跳过记录数
+    - **limit**: 返回记录数
+    - **function_type**: 功能类型 (抗逆/促生/杀虫/抗病/其他)
+    - **search**: 搜索关键词
+    """
+    # TODO: 实现数据库查询
+    return {
+        "total": 0,
+        "items": [],
+        "skip": skip,
+        "limit": limit
+    }
+
+
+@router.get("/{gene_id}")
+async def get_gene_detail(gene_id: str):
+    """
+    获取基因详情
+    """
+    # TODO: 从数据库查询基因详细信息
+    raise HTTPException(status_code=404, detail="Gene not found")
+
+
+@router.get("/functions/categories")
+async def get_gene_functions():
+    """
+    获取基因功能分类
+    """
+    return {
+        "categories": [
+            {"id": 1, "name": "抗逆基因", "count": 0},
+            {"id": 2, "name": "促生基因", "count": 0},
+            {"id": 3, "name": "杀虫基因", "count": 0},
+            {"id": 4, "name": "抗病基因", "count": 0},
+            {"id": 5, "name": "其他功能基因", "count": 0},
+        ]
+    }

web/ws/backend/app/api/v1/endpoints/genomes.py

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+"""
+基因组学数据 API
+"""
+from typing import List, Optional
+from fastapi import APIRouter, Query, HTTPException
+
+router = APIRouter()
+
+
+@router.get("/")
+async def get_genomes(
+    skip: int = Query(0, ge=0),
+    limit: int = Query(20, ge=1, le=100),
+    data_type: Optional[str] = None,
+    species: Optional[str] = None,
+):
+    """
+    获取基因组数据列表
+    
+    - **skip**: 跳过记录数
+    - **limit**: 返回记录数
+    - **data_type**: 数据类型 (基因组学/转录组学/其他组学)
+    - **species**: 物种名称
+    """
+    # TODO: 实现数据库查询
+    return {
+        "total": 0,
+        "items": [],
+        "skip": skip,
+        "limit": limit
+    }
+
+
+@router.get("/{genome_id}")
+async def get_genome_detail(genome_id: str):
+    """
+    获取基因组详情
+    """
+    # TODO: 从数据库查询基因组详细信息
+    raise HTTPException(status_code=404, detail="Genome not found")
+
+
+@router.get("/species/tree")
+async def get_species_tree():
+    """
+    获取物种分类树
+    """
+    # TODO: 返回物种分类树结构
+    return {
+        "tree": []
+    }

web/ws/backend/app/api/v1/endpoints/strains.py

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+"""
+菌种资源 API
+"""
+from typing import List, Optional
+from fastapi import APIRouter, Query, HTTPException
+
+router = APIRouter()
+
+
+@router.get("/")
+async def get_strains(
+    skip: int = Query(0, ge=0),
+    limit: int = Query(20, ge=1, le=100),
+    category: Optional[str] = None,
+    search: Optional[str] = None,
+):
+    """
+    获取菌种列表
+    
+    - **skip**: 跳过记录数
+    - **limit**: 返回记录数
+    - **category**: 菌种分类 (抗逆/促生/杀虫/抗病/食药用)
+    - **search**: 搜索关键词
+    """
+    # TODO: 实现数据库查询
+    return {
+        "total": 0,
+        "items": [],
+        "skip": skip,
+        "limit": limit
+    }
+
+
+@router.get("/{strain_id}")
+async def get_strain_detail(strain_id: str):
+    """
+    获取菌种详情
+    """
+    # TODO: 从数据库查询菌种详细信息
+    raise HTTPException(status_code=404, detail="Strain not found")
+
+
+@router.get("/categories/tree")
+async def get_strain_categories():
+    """
+    获取菌种分类树
+    """
+    return {
+        "categories": [
+            {"id": 1, "name": "抗逆微生物", "count": 0},
+            {"id": 2, "name": "促生微生物", "count": 0},
+            {"id": 3, "name": "杀虫微生物", "count": 0},
+            {"id": 4, "name": "抗病微生物", "count": 0},
+            {"id": 5, "name": "食药用微生物", "count": 0},
+        ]
+    }

web/ws/backend/app/api/v1/endpoints/upload.py

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+"""
+数据汇交上传 API
+"""
+from typing import Optional
+from fastapi import APIRouter, UploadFile, File, Form, HTTPException, BackgroundTasks
+from app.core.security import verify_upload_key
+
+router = APIRouter()
+
+
+@router.post("/verify-key")
+async def verify_key(key: str = Form(...)):
+    """
+    验证上传口令
+    """
+    is_valid = await verify_upload_key(key)
+    if not is_valid:
+        raise HTTPException(status_code=401, detail="Invalid upload key")
+    return {"status": "success", "message": "Key verified"}
+
+
+@router.post("/genome")
+async def upload_genome_data(
+    background_tasks: BackgroundTasks,
+    project_id: str = Form(...),
+    submitter_name: str = Form(...),
+    submitter_email: str = Form(...),
+    upload_key: str = Form(...),
+    file: Optional[UploadFile] = File(None),
+):
+    """
+    上传基因组数据
+    
+    支持逐条提交和批量上传
+    """
+    # 验证口令
+    if not await verify_upload_key(upload_key):
+        raise HTTPException(status_code=401, detail="Invalid upload key")
+    
+    # TODO: 处理文件上传
+    if file:
+        # 异步保存文件
+        filename = file.filename
+        # background_tasks.add_task(save_file, file, filename)
+    
+    # TODO: 保存到数据库
+    return {
+        "status": "success",
+        "message": "Data uploaded successfully",
+        "project_id": project_id
+    }
+
+
+@router.post("/metagenome")
+async def upload_metagenome_data(
+    background_tasks: BackgroundTasks,
+    project_id: str = Form(...),
+    submitter_name: str = Form(...),
+    upload_key: str = Form(...),
+    file: Optional[UploadFile] = File(None),
+):
+    """
+    上传宏基因组数据
+    """
+    if not await verify_upload_key(upload_key):
+        raise HTTPException(status_code=401, detail="Invalid upload key")
+    
+    # TODO: 实现宏基因组数据上传逻辑
+    return {
+        "status": "success",
+        "message": "Metagenome data uploaded",
+        "project_id": project_id
+    }
+
+
+@router.post("/raw-data")
+async def upload_raw_data(
+    background_tasks: BackgroundTasks,
+    project_id: str = Form(...),
+    upload_key: str = Form(...),
+    file: UploadFile = File(...),
+):
+    """
+    上传原始测序数据
+    """
+    if not await verify_upload_key(upload_key):
+        raise HTTPException(status_code=401, detail="Invalid upload key")
+    
+    # TODO: 实现原始数据上传逻辑
+    return {
+        "status": "success",
+        "message": "Raw data uploaded",
+        "filename": file.filename
+    }
+
+
+@router.get("/status/{upload_id}")
+async def get_upload_status(upload_id: str):
+    """
+    查询上传状态
+    """
+    # TODO: 从数据库查询上传状态
+    return {
+        "upload_id": upload_id,
+        "status": "processing",
+        "progress": 50
+    }

web/ws/backend/app/api/v1/router.py

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+"""
+API v1 路由汇总
+"""
+from fastapi import APIRouter
+from app.api.v1.endpoints import strains, genomes, genes, upload, analysis
+
+api_router = APIRouter()
+
+# 注册各模块路由
+api_router.include_router(strains.router, prefix="/strains", tags=["strains"])
+api_router.include_router(genomes.router, prefix="/genomes", tags=["genomes"])
+api_router.include_router(genes.router, prefix="/genes", tags=["genes"])
+api_router.include_router(upload.router, prefix="/upload", tags=["upload"])
+api_router.include_router(analysis.router, prefix="/analysis", tags=["analysis"])