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lingyu zeng
2024-11-27 08:48:24 +00:00
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24
demo/BLOSUM62 Normal file
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A 4 -1 -2 -2 0 -1 -1 0 -2 -1 -1 -1 -1 -2 -1 1 0 -3 -2 0 -2 -1 0 -4
R -1 5 0 -2 -3 1 0 -2 0 -3 -2 2 -1 -3 -2 -1 -1 -3 -2 -3 -1 0 -1 -4
N -2 0 6 1 -3 0 0 0 1 -3 -3 0 -2 -3 -2 1 0 -4 -2 -3 3 0 -1 -4
D -2 -2 1 6 -3 0 2 -1 -1 -3 -4 -1 -3 -3 -1 0 -1 -4 -3 -3 4 1 -1 -4
C 0 -3 -3 -3 9 -3 -4 -3 -3 -1 -1 -3 -1 -2 -3 -1 -1 -2 -2 -1 -3 -3 -2 -4
Q -1 1 0 0 -3 5 2 -2 0 -3 -2 1 0 -3 -1 0 -1 -2 -1 -2 0 3 -1 -4
E -1 0 0 2 -4 2 5 -2 0 -3 -3 1 -2 -3 -1 0 -1 -3 -2 -2 1 4 -1 -4
G 0 -2 0 -1 -3 -2 -2 6 -2 -4 -4 -2 -3 -3 -2 0 -2 -2 -3 -3 -1 -2 -1 -4
H -2 0 1 -1 -3 0 0 -2 8 -3 -3 -1 -2 -1 -2 -1 -2 -2 2 -3 0 0 -1 -4
I -1 -3 -3 -3 -1 -3 -3 -4 -3 4 2 -3 1 0 -3 -2 -1 -3 -1 3 -3 -3 -1 -4
L -1 -2 -3 -4 -1 -2 -3 -4 -3 2 4 -2 2 0 -3 -2 -1 -2 -1 1 -4 -3 -1 -4
K -1 2 0 -1 -3 1 1 -2 -1 -3 -2 5 -1 -3 -1 0 -1 -3 -2 -2 0 1 -1 -4
M -1 -1 -2 -3 -1 0 -2 -3 -2 1 2 -1 5 0 -2 -1 -1 -1 -1 1 -3 -1 -1 -4
F -2 -3 -3 -3 -2 -3 -3 -3 -1 0 0 -3 0 6 -4 -2 -2 1 3 -1 -3 -3 -1 -4
P -1 -2 -2 -1 -3 -1 -1 -2 -2 -3 -3 -1 -2 -4 7 -1 -1 -4 -3 -2 -2 -1 -2 -4
S 1 -1 1 0 -1 0 0 0 -1 -2 -2 0 -1 -2 -1 4 1 -3 -2 -2 0 0 0 -4
T 0 -1 0 -1 -1 -1 -1 -2 -2 -1 -1 -1 -1 -2 -1 1 5 -2 -2 0 -1 -1 0 -4
W -3 -3 -4 -4 -2 -2 -3 -2 -2 -3 -2 -3 -1 1 -4 -3 -2 11 2 -3 -4 -3 -2 -4
Y -2 -2 -2 -3 -2 -1 -2 -3 2 -1 -1 -2 -1 3 -3 -2 -2 2 7 -1 -3 -2 -1 -4
V 0 -3 -3 -3 -1 -2 -2 -3 -3 3 1 -2 1 -1 -2 -2 0 -3 -1 4 -3 -2 -1 -4
B -2 -1 3 4 -3 0 1 -1 0 -3 -4 0 -3 -3 -2 0 -1 -4 -3 -3 4 1 -1 -4
Z -1 0 0 1 -3 3 4 -2 0 -3 -3 1 -1 -3 -1 0 -1 -3 -2 -2 1 4 -1 -4
X 0 -1 -1 -1 -2 -1 -1 -1 -1 -1 -1 -1 -1 -1 -2 0 0 -2 -1 -1 -1 -1 -1 -4
* -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 1

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demo/functionsite Normal file
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Q09472 1554
Q09472 1555
Q09472 1558
Q09472 1560
P62806 17
P08515 11
P08515 180
P08515 181
P68431 24
P61830 24
P61830 57
P55912 592
Q6P980 132

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#KprFunc 1.0 Parameters
#Version: 1.0
#By Chenwei Wang @HUST
@param Code=K Up=10 Down=10
@AUC=0.6965301379789716
@weight -0.018689462273396077 -0.018744888854332252 0.00294702479025041 -0.018721678351478477 -0.01800558569261358 -0.008358276798366189 -0.00907753373048285 0.005118357005704048 0.004476784921562541 0.001917935779225377 -0.012826394014935651 -0.010954111727165613 0.011940789952102696 0.012207912112939114 -0.002808208285854016 -0.0009658925061748041 0.0011404113910593882 0.012443692092668724 0.013060442658975291 -0.019556766645198398 0.004787683132730011 0.0009189775531212159 0.019910902066826296 0.025785778782636607 0.02280656388019064 0.03548725141382741 0.020884032586196186 0.03378028343513734 -0.006675521197197722 0.01805101776679797 -2.6856017654315826e-05 0.09983429259831926 -0.005350043836287985 0.035294469712788816 0.04530583290961643 0.030707674319242206 0.03538658589192208 0.04989596526751631 0.03753221601130363 0.004211112881363887 0.009338818135657265 0.009921848303412887 0.004476961340685209 -0.00398459142499561 0.008164531072787896 0.007821462401426152 0.010531762609291787 -0.006370575721155825 0.015161718270273355 0.006265233004570455 -0.007496366116987143 0.011051331297383008 -0.0026721724621365022 0.007655540505946334 -0.028687938189757952 -0.0241422469916008 -0.006096023243209063 -0.025903648378292152 -0.016341332872108923 -0.008695073272698103 -0.028922372950143112
A R N D C Q E G H I L K M F P S T W Y V B Z X *
A -79.21686178125424 -65.92132479850945 -79.98837212206928 92.62139439026826 0.0 -21.673970536667984 -38.81557522754138 0.0 74.70048538908974 22.26925623514351 32.55176650198224 16.260618898029154 0.844571769278751 229.2800946549054 -120.58516522445346 9.831165105980736 0.0 -30.11430460434257 157.99685552930555 0.0 -0.0 -0.0 0.0 -72.28615205702248
R -65.92132479850945 30.09743981271335 0.0 -127.02603043821476 -47.51118830327828 -8.61542160592377 0.0 32.14691537634928 0.0 99.03478796565255 -15.398450570193724 184.41772332322412 -19.513532542042633 59.38657875242247 -97.91990790887277 7.909847690097471 -120.73934856938855 259.1479731984058 -57.80617886251458 3.15784189370199 -0.0 0.0 -2.2430271649812012 -83.17589601530933
N -79.98837212206928 0.0 103.35925354177455 20.41222620657458 113.62257738361774 0.0 0.0 0.0 -22.913232019703905 39.41527892555478 -16.34179104717671 0.0 66.55298009842075 -115.03738702753992 62.38574308704257 -59.70824767428982 0.0 -126.64758255182352 -29.341962910726068 -27.96035539921929 0.0 0.0 -0.23799812081034613 59.40017704226467
D 92.62139439026826 -127.02603043821476 20.41222620657458 -166.9984768142573 -298.0180353277666 0.0 112.39046530449396 141.25195148672574 78.7055610292056 60.9359525727567 -107.26096533357821 7.14594395804312 125.22062150229573 -101.84047524195205 33.01074173760774 0.0 -50.70922225927597 -272.499852043676 -378.0551730872354 0.28823662800545113 0.0 0.0 -2.357496950620939 13.483413642880151
C 0.0 -47.51118830327828 113.62257738361774 -298.0180353277666 492.59096915638327 7.414999786573917 349.82196783846547 -83.29268620399931 39.09460958221237 -7.026576196714204 -23.517740862810317 -108.49426532779171 -6.140783256356095 58.485369954483964 -153.2385067054147 -22.131647853054037 12.81319193625693 -62.90926556444103 -21.46768802400408 -95.7555256521471 -0.0 -0.0 1.0433529656873173 15.170410091971686
Q -21.673970536667984 -8.61542160592377 0.0 0.0 7.414999786573917 -128.29372461437015 72.73437533733868 36.57712103211332 0.0 94.4442736338702 35.11394163994572 -79.45814968467835 0.0 -312.90370011939405 65.67191337898352 0.0 53.113460301023835 64.28326791769194 -42.34239872981483 -91.41211386862538 0.0 0.0 -0.7884247508056094 50.904456241584874
E -38.81557522754138 0.0 0.0 112.39046530449396 349.82196783846547 72.73437533733868 -56.71503509361014 30.319768311411483 0.0 -202.11092180585268 -41.28978478267595 -54.40717794468668 -83.33700073981204 125.85623503422804 151.79293168921117 0.0 -44.4578980238522 -45.84358702785538 126.28513741886557 -0.9960624102945992 0.0 0.0 -3.8888696091556834 -49.22440112687386
G 0.0 32.14691537634928 0.0 141.25195148672574 -83.29268620399931 36.57712103211332 30.319768311411483 -403.3729867646581 -349.72183059949555 120.69236333382085 19.05212621188991 -26.126972634359213 6.469825848552872 110.3068590225507 -34.51877747119401 0.0 307.56378189169965 -204.99307699784714 -124.48622953813785 23.5754978183186 -0.0 -0.0 -0.5676051387596681 -37.5380905290468
H 74.70048538908974 0.0 -22.913232019703905 78.7055610292056 39.09460958221237 0.0 0.0 -349.72183059949555 -199.5675794762037 64.11038662625575 -2.1286239816855694 55.507429663136115 122.77702460075692 1.3510533585612652 103.6913785579249 27.327718354460142 -12.014242019512894 92.24661803309353 -16.577928267940926 12.72213814812037 0.0 0.0 -0.4261959470553026 -30.946696207802955
I 22.26925623514351 99.03478796565255 39.41527892555478 60.9359525727567 -7.026576196714204 94.4442736338702 -202.11092180585268 120.69236333382085 64.11038662625575 -337.9806468653485 -119.12646972648812 -81.45732610916914 -64.17912608236941 0.0 90.00817181318124 81.13242575369226 -22.442321947035097 -96.40634303220645 -19.604999555912414 141.40317709321485 -0.0 -0.0 -0.3129748998700986 -0.7337125394934492
L 32.55176650198224 -15.398450570193724 -16.34179104717671 -107.26096533357821 -23.517740862810317 35.11394163994572 -41.28978478267595 19.05212621188991 -2.1286239816855694 -119.12646972648812 56.051759657080964 55.116747195509035 -35.62343511963436 0.0 23.335349459352063 -76.08144081690865 -46.27414973333793 -214.5806513794929 -111.90357389854505 32.99635456881741 -0.0 -0.0 0.2916698996042472 56.557383414628916
K 16.260618898029154 184.41772332322412 0.0 7.14594395804312 -108.49426532779171 -79.45814968467835 -54.40717794468668 -26.126972634359213 55.507429663136115 -81.45732610916914 55.116747195509035 -78.75268382796665 40.13095072867636 -157.52814111846226 36.24737383146892 0.0 -17.474921927682338 102.32952605615694 114.22615700194471 -51.71780708741426 0.0 0.0 -2.7164115917493046 -9.690341603582475
M 0.844571769278751 -19.513532542042633 66.55298009842075 125.22062150229573 -6.140783256356095 0.0 -83.33700073981204 6.469825848552872 122.77702460075692 -64.17912608236941 -35.62343511963436 40.13095072867636 -41.23204113299315 0.0 -86.65262964865319 -19.216205065919947 -43.64623499562159 5.846479010920261 -24.87394221794222 -18.693380838323208 -0.0 -0.0 -0.05397067529379592 82.24793446282418
F 229.2800946549054 59.38657875242247 -115.03738702753992 -101.84047524195205 58.485369954483964 -312.90370011939405 125.85623503422804 110.3068590225507 1.3510533585612652 0.0 0.0 -157.52814111846226 0.0 -612.6517054598662 -118.16563738729351 187.24293780426152 -126.71638003680711 21.984863606707254 74.84992027204291 -77.34998690903478 -0.0 -0.0 -0.25165023465121844 -8.227278957779806
P -120.58516522445346 -97.91990790887277 62.38574308704257 33.01074173760774 -153.2385067054147 65.67191337898352 151.79293168921117 -34.51877747119401 103.6913785579249 90.00817181318124 23.335349459352063 36.24737383146892 -86.65262964865319 -118.16563738729351 -220.77117992791 31.203741262404847 -23.21406824589217 180.17267210895102 143.6005722168128 -70.56658554386473 -0.0 -0.0 -3.4159732225792228 12.238138416341974
S 9.831165105980736 7.909847690097471 -59.70824767428982 0.0 -22.131647853054037 0.0 0.0 0.0 27.327718354460142 81.13242575369226 -76.08144081690865 0.0 -19.216205065919947 187.24293780426152 31.203741262404847 -248.04389065721458 50.00369037933264 20.65980432304682 -145.01776399359676 -62.43589859119674 0.0 0.0 0.0 102.60166838915332
T 0.0 -120.73934856938855 0.0 -50.70922225927597 12.81319193625693 53.113460301023835 -44.4578980238522 307.56378189169965 -12.014242019512894 -22.442321947035097 -46.27414973333793 -17.474921927682338 -43.64623499562159 -126.71638003680711 -23.21406824589217 50.00369037933264 -121.7444087876097 -6.535735822302903 119.90609700147013 0.0 -0.0 -0.0 0.0 -41.644490043119156
W -30.11430460434257 259.1479731984058 -126.64758255182352 -272.499852043676 -62.90926556444103 64.28326791769194 -45.84358702785538 -204.99307699784714 92.24661803309353 -96.40634303220645 -214.5806513794929 102.32952605615694 5.846479010920261 21.984863606707254 180.17267210895102 20.65980432304682 -6.535735822302903 -1021.4479806205242 57.811761195943006 198.61423085950054 -0.0 -0.0 0.47845888878625414 102.66355520252834
Y 157.99685552930555 -57.80617886251458 -29.341962910726068 -378.0551730872354 -21.46768802400408 -42.34239872981483 126.28513741886557 -124.48622953813785 -16.577928267940926 -19.604999555912414 -111.90357389854505 114.22615700194471 -24.87394221794222 74.84992027204291 143.6005722168128 -145.01776399359676 119.90609700147013 57.811761195943006 -447.9360470667096 39.1163467109986 -0.0 -0.0 -0.15500573992694627 89.48920801856288
V 0.0 3.15784189370199 -27.96035539921929 0.28823662800545113 -95.7555256521471 -91.41211386862538 -0.9960624102945992 23.5754978183186 12.72213814812037 141.40317709321485 32.99635456881741 -51.71780708741426 -18.693380838323208 -77.34998690903478 -70.56658554386473 -62.43589859119674 0.0 198.61423085950054 39.1163467109986 -36.00803636365247 -0.0 -0.0 -0.4101578746084907 -55.158673993070664
B -0.0 -0.0 0.0 0.0 -0.0 0.0 0.0 -0.0 0.0 -0.0 -0.0 0.0 -0.0 -0.0 -0.0 0.0 -0.0 -0.0 -0.0 -0.0 0.0 0.0 -0.0 -0.0
Z -0.0 0.0 0.0 0.0 -0.0 0.0 0.0 -0.0 0.0 -0.0 -0.0 0.0 -0.0 -0.0 -0.0 0.0 -0.0 -0.0 -0.0 -0.0 0.0 0.0 -0.0 -0.0
X 0.0 -2.2430271649812012 -0.23799812081034613 -2.357496950620939 1.0433529656873173 -0.7884247508056094 -3.8888696091556834 -0.5676051387596681 -0.4261959470553026 -0.3129748998700986 0.2916698996042472 -2.7164115917493046 -0.05397067529379592 -0.25165023465121844 -3.4159732225792228 0.0 0.0 0.47845888878625414 -0.15500573992694627 -0.4101578746084907 -0.0 -0.0 -0.0 79.82173475395903
* -72.28615205702248 -83.17589601530933 59.40017704226467 13.483413642880151 15.170410091971686 50.904456241584874 -49.22440112687386 -37.5380905290468 -30.946696207802955 -0.7337125394934492 56.557383414628916 -9.690341603582475 82.24793446282418 -8.227278957779806 12.238138416341974 102.60166838915332 -41.644490043119156 102.66355520252834 89.48920801856288 -55.158673993070664 -0.0 -0.0 79.82173475395903 -29.027882579458264