diff --git a/script/S112D/plot_gyration.sh b/script/S112D/plot_gyration.sh
new file mode 100755
index 0000000..705b994
--- /dev/null
+++ b/script/S112D/plot_gyration.sh
@@ -0,0 +1,22 @@
+#!/bin/bash
+
+# 执行回旋半径分析
+gmx_mpi gyrate -s ${MDRUN_NAME}.tpr -n index.ndx -f ${MDRUN_NAME}_center.xtc -o gyration_protein.xvg << EOF
+1  # 选择 Protein 进行回旋半径分析
+EOF
+
+# 使用 Gnuplot 生成回旋半径分析图像
+gnuplot << EOF
+set terminal svg size 800,600
+set output 'gyration_protein.svg'
+
+# 设置标题和轴标签
+set title 'Radius of Gyration Analysis'
+set xlabel 'Time (ns)'
+set ylabel 'Radius of Gyration (nm)'
+
+# 读取数据文件并绘制
+plot 'gyration_protein.xvg' using 1:2 with lines title 'Rg (nm)'
+EOF
+
+echo "Gyration plot generated: gyration_protein.svg"
diff --git a/script/S112D/plot_hbond.sh b/script/S112D/plot_hbond.sh
new file mode 100755
index 0000000..1367774
--- /dev/null
+++ b/script/S112D/plot_hbond.sh
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+#!/bin/bash
+
+# 执行氢键分析
+gmx_mpi hbond -s ${MDRUN_NAME}.tpr -n index.ndx -f ${MDRUN_NAME}_center.xtc -num hbond_protein_ligand.xvg << EOF
+1  # 选择 Protein
+13 # 选择 Ligand (配体)
+EOF
+
+# 使用 Gnuplot 生成氢键分析图像
+gnuplot << EOF
+set terminal svg size 800,600
+set output 'hbond_protein_ligand.svg'
+
+# 设置标题和轴标签
+set title 'Hydrogen Bond Analysis'
+set xlabel 'Time (ns)'
+set ylabel 'Number of H-bonds'
+
+# 读取数据文件并绘制
+plot 'hbond_protein_ligand.xvg' using 1:2 with lines title 'H-bonds'
+EOF
+
+echo "Hydrogen bond plot generated: hbond_protein_ligand.svg"
diff --git a/script/S112D/plot_rmsf.sh b/script/S112D/plot_rmsf.sh
new file mode 100755
index 0000000..5898092
--- /dev/null
+++ b/script/S112D/plot_rmsf.sh
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+#!/bin/bash
+
+# 执行 RMSF 分析
+gmx_mpi rmsf -s ${MDRUN_NAME}.tpr -f ${MDRUN_NAME}_center.xtc -o rmsf_protein.xvg -res -ox avg_structure.pdb -n index.ndx << EOF
+1  # 选择 Protein 进行 RMSF 分析
+EOF
+
+# 使用 Gnuplot 生成 RMSF 图像
+gnuplot << EOF
+set terminal svg size 800,600
+set output 'rmsf_protein.svg'
+
+# 设置标题和轴标签
+set title 'RMSF Analysis'
+set xlabel 'Residue'
+set ylabel 'RMSF (nm)'
+
+# 读取数据文件并绘制
+plot 'rmsf_protein.xvg' using 1:2 with lines title 'RMSF (nm)'
+EOF
+
+echo "RMSF plot generated: rmsf_protein.svg"