[project]
name = "mole-embedding-atlas"
version = "0.1.0"
description = "Add your description here"
readme = "README.md"
requires-python = ">=3.12"
dependencies = [
    "embedding-atlas==0.13.0",
    "ipykernel",
    "anywidget",
    "notebook",
    "rdkit",
    "pandas",
    "selfies==2.1.1",
    "fastapi>=0.111",
    "uvicorn[standard]>=0.29",
    "fastmcp>=2.11",
    "docker>=7.1",
    "httpx>=0.27",
    "pydantic-settings>=2.2",
]

[project.scripts]
embedding-backend = "embedding_backend.main:main"
embedding-backend-api = "embedding_backend.main:run_api"
embedding-backend-mcp = "embedding_backend.main:run_mcp_stdio"

[tool.uv.pip]
index-url = "https://mirrors.tuna.tsinghua.edu.cn/pypi/web/simple"

[tool.setuptools]
package-dir = {"" = "src"}

[tool.setuptools.packages.find]
where = ["src"]

[build-system]
requires = ["setuptools>=68", "wheel"]
build-backend = "setuptools.build_meta"

[tool.uv]
package = true