80 lines
3.0 KiB
Docker
80 lines
3.0 KiB
Docker
FROM jupyter/scipy-notebook
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LABEL base_image="Ubuntu 20.04.3 LTS"
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ARG CREATE_USER="jovyan"
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ARG CREATE_USER_PASSWD="password"
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ARG ROOT_PASSWD="password"
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ARG HOME="/home/${CREATE_USER}"
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ARG DEBIAN_FRONTEND="noninteractive"
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ENV DEBIAN_FRONTEND=${DEBIAN_FRONTEND}
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USER root
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RUN <<EOT
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#!/bin/bash
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# 更新软件源
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apt-get update
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# 安装时区数据包并设置时区
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apt-get install -y tzdata
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ln -sf /usr/share/zoneinfo/Asia/Shanghai /etc/localtime
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echo 'Asia/Shanghai' > /etc/timezone
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dpkg-reconfigure -f noninteractive tzdata
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# 安装所需的软件包
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apt-get install -y python3 python3-pip gcc g++ build-essential nodejs npm gdebi-core curl wget openssh-server vim lrzsz net-tools sudo git
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# 创建新用户
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useradd -m -s /bin/bash ${CREATE_USER}
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echo "${CREATE_USER}:${CREATE_USER_PASSWD}" | chpasswd
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echo "${CREATE_USER} ALL=(ALL:ALL) NOPASSWD:ALL" >> /etc/sudoers
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EOT
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RUN <<EOT
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#!/bin/bash
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# 安装 Jupyter 和相关软件
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npm install -g configurable-http-proxy
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python3 -m pip install jupyterhub jupyterlab notebook radian pycurl jupyter-rsession-proxy ipykernel jupyterlab-language-pack-zh-CN jupyterlab-git jupyterlab-system-monitor jupyter_nbextensions_configurator jupyter_contrib_nbextensions jupyterlab-unfold jupyterlab_widgets jupyterlab-drawio jupyterlab-spreadsheet-editor jupyterlab-cell-flash jedi-language-server jupyterlab_code_formatter jupyterlab-spellchecker jupyterlab_vim nbresuse ipydrawio jedi ipympl black isort theme-darcula ipywidgets tensorboard jupyterlab_latex jupyter_bokeh autopep8 xeus-python jupyterlab-lsp python-lsp-server nglview dockerspawner jupyterhub-nativeauthenticator lckr_jupyterlab_variableinspector
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# 创建 JupyterHub 配置目录
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mkdir -p /root/.jupyterhub
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EOT
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# jupyter-nbextension enable nglview --py --sys-prefix
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# jupyter nbextension enable --py --sys-prefix widgetsnbextension
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# conda install Rstudio
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RUN <<EOT
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#!/bin/bash
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add-apt-repository 'deb https://cloud.r-project.org/bin/linux/ubuntu focal-cran40/'
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apt-key adv --keyserver keyserver.ubuntu.com --recv-keys E298A3A825C0D65DFD57CBB651716619E084DAB9
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apt-get update
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apt-get install -y r-base
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sudo wget https://download2.rstudio.org/server/focal/amd64/rstudio-server-2023.06.0-421-amd64.deb -O /tmp/rstudio-server.deb
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sudo chmod +x /tmp/rstudio-server.deb
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sudo gdebi -n /tmp/rstudio-server.deb
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sudo rm -rf /tmp/rstudio-server.deb
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EOT
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RUN <<EOT
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#!/bin/bash
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# 安装micromamba
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echo "1" | bash <(curl -s https://raw.githubusercontent.com/hotwa/MicroMamba_Installer/main/install.sh)
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mkdir -p /root/workspace/personal /root/workspace/project
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EOT
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RUN <<EOT
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#!/bin/bash
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apt install -y texlive-full
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micromamba create -n plot -c conda-forge scienceplots autopep8 python=3 ipykernel pandas numpy matplotlib scipy seaborn orange3 -y
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pip install bamboolib
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EOT
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RUN <<EOT
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#!/bin/bash
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# 清理和减小镜像大小
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apt-get clean
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rm -rf /var/lib/apt/lists/* /tmp/* /var/tmp/* /usr/share/man/?? /usr/share/man/??_*
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EOT
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RUN <<EOT
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#!/bin/bash
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micromamba create -n scardock -c conda-forge -c pylyzeng -c bioconda vinautil -y
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EOT
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CMD ["jupyterhub", "-f", "/srv/jupyterhub/jupyterhub_config.py"] |