FROM jupyter/scipy-notebook
LABEL base_image="Ubuntu 20.04.3 LTS"

ARG CREATE_USER="jovyan"
ARG CREATE_USER_PASSWD="password"
ARG ROOT_PASSWD="password"
ARG HOME="/home/${CREATE_USER}"
ARG DEBIAN_FRONTEND="noninteractive"
ENV DEBIAN_FRONTEND=${DEBIAN_FRONTEND}

USER root
RUN <<EOT
#!/bin/bash
# 更新软件源
apt-get update
# 安装时区数据包并设置时区
apt-get install -y tzdata 
ln -sf /usr/share/zoneinfo/Asia/Shanghai /etc/localtime
echo 'Asia/Shanghai' > /etc/timezone
dpkg-reconfigure -f noninteractive tzdata
# 安装所需的软件包
apt-get install -y python3 python3-pip gcc g++ build-essential nodejs npm gdebi-core curl wget openssh-server vim lrzsz net-tools sudo git
# 创建新用户
useradd -m -s /bin/bash ${CREATE_USER}
echo "${CREATE_USER}:${CREATE_USER_PASSWD}" | chpasswd
echo "${CREATE_USER} ALL=(ALL:ALL) NOPASSWD:ALL" >> /etc/sudoers
EOT

RUN <<EOT
#!/bin/bash
# 安装 Jupyter 和相关软件
npm install -g configurable-http-proxy
python3 -m pip install jupyterhub jupyterlab notebook radian pycurl jupyter-rsession-proxy ipykernel jupyterlab-language-pack-zh-CN jupyterlab-git jupyterlab-system-monitor jupyter_nbextensions_configurator jupyter_contrib_nbextensions jupyterlab-unfold jupyterlab_widgets jupyterlab-drawio jupyterlab-spreadsheet-editor jupyterlab-cell-flash jedi-language-server jupyterlab_code_formatter jupyterlab-spellchecker jupyterlab_vim nbresuse ipydrawio jedi ipympl black isort theme-darcula ipywidgets tensorboard jupyterlab_latex jupyter_bokeh autopep8 xeus-python jupyterlab-lsp python-lsp-server nglview dockerspawner jupyterhub-nativeauthenticator lckr_jupyterlab_variableinspector
# 创建 JupyterHub 配置目录
mkdir -p /root/.jupyterhub
EOT

# jupyter-nbextension enable nglview --py --sys-prefix
# jupyter nbextension enable --py --sys-prefix widgetsnbextension

# conda install Rstudio
RUN <<EOT
#!/bin/bash
add-apt-repository 'deb https://cloud.r-project.org/bin/linux/ubuntu focal-cran40/'
apt-key adv --keyserver keyserver.ubuntu.com --recv-keys E298A3A825C0D65DFD57CBB651716619E084DAB9
apt-get update
apt-get install -y r-base 
sudo wget https://download2.rstudio.org/server/focal/amd64/rstudio-server-2023.06.0-421-amd64.deb -O /tmp/rstudio-server.deb
sudo chmod +x /tmp/rstudio-server.deb 
sudo gdebi -n /tmp/rstudio-server.deb
sudo rm -rf /tmp/rstudio-server.deb
EOT

RUN <<EOT
#!/bin/bash
# 安装micromamba
echo "1" | bash <(curl -s https://raw.githubusercontent.com/hotwa/MicroMamba_Installer/main/install.sh)
mkdir -p /root/workspace/personal /root/workspace/project
EOT

RUN <<EOT
#!/bin/bash
apt install -y texlive-full
micromamba create -n plot -c conda-forge scienceplots autopep8 python=3 ipykernel pandas numpy matplotlib scipy seaborn orange3 -y
pip install bamboolib
EOT

RUN <<EOT
#!/bin/bash
# 清理和减小镜像大小
apt-get clean 
rm -rf /var/lib/apt/lists/* /tmp/* /var/tmp/* /usr/share/man/?? /usr/share/man/??_*
EOT

RUN <<EOT
#!/bin/bash
micromamba create -n scardock -c conda-forge -c pylyzeng -c bioconda vinautil -y
EOT

CMD ["jupyterhub", "-f", "/srv/jupyterhub/jupyterhub_config.py"]