From 779ca9a2b2ad428dcc5d49b404aadb321aebdae1 Mon Sep 17 00:00:00 2001
From: Your Name <you@example.com>
Date: Wed, 17 Jul 2024 05:01:55 +0000
Subject: [PATCH] Merged specific files from main branch into devgpu

---
 spawnerdockerfile/Dockerfile.ngc         | 161 +++++++++++++++++++++++
 spawnerdockerfile/docker-compose_ngc.yml |  72 ++++++++++
 spawnerdockerfile/install_conda.sh       |  20 +++
 3 files changed, 253 insertions(+)
 create mode 100644 spawnerdockerfile/Dockerfile.ngc
 create mode 100644 spawnerdockerfile/docker-compose_ngc.yml
 create mode 100644 spawnerdockerfile/install_conda.sh

diff --git a/spawnerdockerfile/Dockerfile.ngc b/spawnerdockerfile/Dockerfile.ngc
new file mode 100644
index 0000000..7a4e3c5
--- /dev/null
+++ b/spawnerdockerfile/Dockerfile.ngc
@@ -0,0 +1,161 @@
+ARG REGISTRY=quay.io
+ARG OWNER=jupyter
+ARG LABEL=notebook
+ARG VERSION
+ARG BASE_CONTAINER=$REGISTRY/$OWNER/$LABEL:$VERSION
+FROM $BASE_CONTAINER
+ARG HTTP_PROXY
+ARG HTTPS_PROXY
+ENV http_proxy=${HTTP_PROXY}
+ENV https_proxy=${HTTPS_PROXY}
+ARG DEBIAN_FRONTEND="noninteractive"
+ENV DEBIAN_FRONTEND=${DEBIAN_FRONTEND}
+ARG ROOT_PASSWD="root"
+ENV ROOT_PASSWD=${ROOT_PASSWD}
+WORKDIR /root
+SHELL ["/bin/bash", "-c"]
+
+# https://network.nvidia.com/products/infiniband-drivers/linux/mlnx_ofed/
+ENV MLNX_OFED_VERSION=23.10-3.2.2.0 
+RUN <<EOT
+#!/bin/bash
+# SYSTEM_NAME=$(lsb_release -cs) # 查看发行版本
+# Pre-build **latest** DeepSpeed, so it would be ready for testing (otherwise, the 1st deepspeed test will timeout)
+python3 -m pip uninstall -y deepspeed
+# This has to be run (again) inside the GPU VMs running the tests.
+# The installation works here, but some tests fail, if we do not pre-build deepspeed again in the VMs running the tests.
+# TODO: Find out why test fail. install deepspeed
+# DS_BUILD_CPU_ADAM=${DS_BUILD_CPU_ADAM} DS_BUILD_FUSED_ADAM={DS_BUILD_FUSED_ADAM} python3 -m pip install "deepspeed<=0.14.0" --global-option="build_ext" --global-option="-j8" --no-cache -v --disable-pip-version-check 2>&1
+# from https://github.com/huggingface/transformers/blob/main/docker/transformers-pytorch-deepspeed-latest-gpu/Dockerfile install deepspeed fail 
+# reference deepspeed install from https://github.com/microsoft/DeepSpeed/blob/master/docker/Dockerfile
+# install deepspeed prepare
+# install Mellanox OFED
+mkdir -p ${STAGE_DIR}
+wget -q -O - http://www.mellanox.com/downloads/ofed/MLNX_OFED-${MLNX_OFED_VERSION}/MLNX_OFED_LINUX-${MLNX_OFED_VERSION}-ubuntu22.04-x86_64.tgz | tar xzf -
+cd MLNX_OFED_LINUX-${MLNX_OFED_VERSION}-ubuntu22.04-x86_64
+./mlnxofedinstall --user-space-only --without-fw-update --all -q 
+cd ${STAGE_DIR} 
+rm -rf ${STAGE_DIR}/MLNX_OFED_LINUX-${MLNX_OFED_VERSION}-ubuntu22.04-x86_64*
+EOT
+
+ARG NV_PEER_MEM_VERSION="1.2"
+ENV NV_PEER_MEM_VERSION=${NV_PEER_MEM_VERSION}
+ENV NV_PEER_MEM_TAG=${NV_PEER_MEM_VERSION}-0
+RUN <<EOT
+#!/bin/bash
+# install nv_peer_mem
+mkdir -p ${STAGE_DIR}
+git clone https://github.com/Mellanox/nv_peer_memory.git --branch ${NV_PEER_MEM_TAG} ${STAGE_DIR}/nv_peer_memory
+cd ${STAGE_DIR}/nv_peer_memory
+./build_module.sh
+cd ${STAGE_DIR}
+tar xzf ${STAGE_DIR}/nvidia-peer-memory_${NV_PEER_MEM_VERSION}.orig.tar.gz
+cd ${STAGE_DIR}/nvidia-peer-memory-${NV_PEER_MEM_VERSION}
+apt-get update
+apt --fix-broken install -y
+apt-get install -y dkms
+dpkg-buildpackage -us -uc
+dpkg -i ${STAGE_DIR}/nvidia-peer-memory_${NV_PEER_MEM_TAG}_all.deb
+EOT
+
+# base tools
+RUN <<EOT
+#!/bin/bash
+apt-get update
+apt-get install -y bash-completion wget curl htop jq vim bash libaio-dev build-essential openssh-server python3 python3-pip bzip2 sudo 
+apt-get install -y --no-install-recommends software-properties-common build-essential autotools-dev nfs-common pdsh cmake g++ gcc curl wget vim tmux emacs less unzip htop iftop iotop ca-certificates openssh-client openssh-server rsync iputils-ping net-tools sudo llvm-dev re2c
+add-apt-repository ppa:git-core/ppa -y
+apt-get install -y git libnuma-dev wget
+# Configure SSH for password and public key authentication
+sed -i 's/#PermitRootLogin prohibit-password/PermitRootLogin yes/' /etc/ssh/sshd_config
+sed -i 's/#PasswordAuthentication yes/PasswordAuthentication yes/' /etc/ssh/sshd_config
+sed -i 's/PubkeyAuthentication no/PubkeyAuthentication yes/' /etc/ssh/sshd_config
+sed -i 's/^#Port 22/Port 22/' /etc/ssh/sshd_config
+sed -i 's/^Port [0-9]*/Port 22/' /etc/ssh/sshd_config
+mkdir /var/run/sshd
+echo "root:${ROOT_PASSWD}" | chpasswd
+mkdir -p ~/.pip
+eval "$(curl https://get.x-cmd.com)"
+# install pixi
+curl -fsSL https://pixi.sh/install.sh | bash
+EOT
+
+RUN <<EOT
+#!/bin/bash
+pip install -v -U git+https://github.com/facebookresearch/xformers.git@main#egg=xformers
+pip install git+https://github.com/huggingface/transformers
+EOT
+
+ENV STAGE_DIR=/tmp
+RUN <<EOT
+#!/bin/bash
+git clone https://github.com/microsoft/DeepSpeed-Kernels.git ${STAGE_DIR}/DeepSpeed-Kernels
+cd ${STAGE_DIR}/DeepSpeed-Kernels
+python -m pip install -v .
+EOT
+
+RUN <<EOT
+#!/bin/bash
+git clone https://github.com/oneapi-src/oneCCL.git ${STAGE_DIR}/oneCCL
+cd ${STAGE_DIR}/oneCCL
+git checkout . 
+git checkout master
+mkdir build
+cd build 
+cmake .. -DCMAKE_INSTALL_PREFIX=/usr/local
+make -j"$(nproc)" install
+EOT
+
+ARG DEEPSPEED_VERSION="v0.14.3"
+ENV DEEPSPEED_VERSION=${DEEPSPEED_VERSION}
+ARG DEEPSPEED_INSTALL_FLAGS="--allow_sudo --pip_sudo --verbose"
+ENV DEEPSPEED_INSTALL_FLAGS=${DEEPSPEED_INSTALL_FLAGS}
+ARG DS_BUILD_SPARSE_ATTN=0
+ENV DS_BUILD_SPARSE_ATTN=${DS_BUILD_SPARSE_ATTN}
+ARG DS_BUILD_FUSED_ADAM=1
+ENV DS_BUILD_FUSED_ADAM=${DS_BUILD_FUSED_ADAM}
+ARG DS_BUILD_CPU_ADAM=1
+ENV DS_BUILD_CPU_ADAM=${DS_BUILD_CPU_ADAM}
+ARG DS_BUILD_OPS=1
+ENV DS_BUILD_OPS=${DS_BUILD_OPS}
+ARG HOSTFILE_CONTENT=""
+ENV HOSTFILE_CONTENT=${HOSTFILE_CONTENT}
+ENV CUTLASS_PATH="/opt/pytorch/pytorch/third_party/cutlass"
+ENV CUDA_HOME="/usr/local/cuda"
+ENV LD_LIBRARY_PATH=${CUDA_HOME}/lib64:${LD_LIBRARY_PATH}
+ENV PATH=${CUDA_HOME}/bin:${PATH}
+RUN <<EOT
+#!/bin/bash
+git clone https://github.com/microsoft/DeepSpeed.git ${STAGE_DIR}/DeepSpeed
+cd ${STAGE_DIR}/DeepSpeed
+git checkout ${DEEPSPEED_VERSION}
+./install.sh ${DEEPSPEED_INSTALL_FLAGS}
+ds_report
+EOT
+
+RUN <<EOT
+#!/bin/bash
+python -m pip install --upgrade pip
+python -m pip install peft tiktoken seaborn blobfile open_clip_torch zstandard mpi4py
+# optimum 手动解决依赖
+python -m pip install black~=23.1 ruff==0.1.5 diffusers>=0.17.0
+python -m pip install --no-deps git+https://github.com/huggingface/optimum.git#egg=optimum[diffusers,quality]
+EOT
+
+RUN <<EOT
+#!/bin/bash
+# 项目目录中的定义通常会覆盖用户家目录中的定义
+# 配置 .deepspeed_env 文件
+cat <<EOF > ~/.deepspeed_env
+TORCH_USE_CUDA_DSA=1
+DEEPSPEED_VERBOSE=1
+DEEPSPEED_LOG_LEVEL=DEBUG
+CUTLASS_PATH=${CUTLASS_PATH}
+TORCH_CUDA_ARCH_LIST=${TORCH_CUDA_ARCH_LIST}
+CUDA_HOME=${CUDA_HOME}
+LD_LIBRARY_PATH=${LD_LIBRARY_PATH}
+EOF
+unset https_proxy http_proxy
+EOT
+
+CMD ["/usr/sbin/sshd", "-D"]
\ No newline at end of file
diff --git a/spawnerdockerfile/docker-compose_ngc.yml b/spawnerdockerfile/docker-compose_ngc.yml
new file mode 100644
index 0000000..b925144
--- /dev/null
+++ b/spawnerdockerfile/docker-compose_ngc.yml
@@ -0,0 +1,72 @@
+version: '3.9'
+
+# DeepSpeed支持多种C++/CUDA扩展（ops），这些ops旨在优化深度学习的训练和推理过程。以下是一些主要的DeepSpeed ops及其功能：
+
+# FusedAdam - 提供融合优化的Adam优化器，适用于GPU。
+# FusedLamb - 类似FusedAdam，针对LAMB优化器，适用于大规模分布式训练。
+# SparseAttention - 用于高效计算稀疏注意力机制。
+# Transformer - 提供Transformer模型的高效实现。
+# TransformerInference - 专门用于Transformer模型的推理优化。
+# CPUAdam - 针对CPU优化的Adam优化器。
+# CPULion - 针对CPU的Lion优化器。
+# Quantizer - 提供量化支持，以减少模型大小和提高推理速度。
+# RandomLTD - 用于随机层裁剪的优化器。
+# StochasticTransformer - 支持随机Transformer模型的训练和推理。
+
+# 检测系统总内存（以GB为单位）
+# TOTAL_MEM=$(awk '/MemTotal/ {printf "%.0f\n", $2/1024/1024}' /proc/meminfo)
+# echo "Docker Compose 文件已生成，shm_size 设置为 ${TOTAL_MEM}GB。"
+
+services:
+  ubuntu-finetune:
+    build: 
+      context: .
+      dockerfile: Dockerfile.ngc
+      args: # PyTorch版本、Python版本与pytorch_lightning版本的对应关系表 https://blog.csdn.net/qq_41813454/article/details/137421822
+        REGISTRY: "nvcr.io"
+        OWNER: "nvidia" # nvcr.io/nvidia/pytorch:24.06-py3
+        LABEL: "pytorch"
+        VERSION: "24.06-py3"
+        DS_BUILD_OPS: 1
+        DEEPSPEED_VERSION: "master"
+        DEEPSPEED_INSTALL_FLAGS: "--allow_sudo"
+        HTTP_PROXY: "http://127.0.0.1:15777"
+        HTTPS_PROXY: "http://127.0.0.1:15777"
+        CACHEBUST: 1
+    # volumes:
+    #   - ./workspace:/workspace
+      # - /tmp:/tmp
+    container_name: ubuntu-ngc
+    pull_policy: if_not_present
+    ulimits:
+      memlock:
+        soft: -1
+        hard: -1
+    # tty: true
+    # stdin_open: true
+    restart: unless-stopped
+    image: hotwa/notebook:ngc
+    privileged: true
+    ipc: host
+    network_mode: host
+    shm_size: '128gb'
+    # ports:
+    #   - 3228:2222
+    environment:
+      - NVIDIA_VISIBLE_DEVICES=all
+      - NVIDIA_DRIVER_CAPABILITIES=compute,utility
+      - TMPDIR=/var/tmp
+    # networks:
+    #   - network_finetune
+    # command: ["/usr/sbin/sshd", "-D"]
+    deploy:
+      resources:
+        reservations:
+          devices:
+            - driver: nvidia
+              count: all
+              capabilities: [gpu]
+
+# networks:
+#   network_finetune:
+#     name: network_finetune
diff --git a/spawnerdockerfile/install_conda.sh b/spawnerdockerfile/install_conda.sh
new file mode 100644
index 0000000..420690e
--- /dev/null
+++ b/spawnerdockerfile/install_conda.sh
@@ -0,0 +1,20 @@
+# install miniconda
+wget -qO- https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh -O /tmp/miniconda.sh
+bash /tmp/miniconda.sh -b -p /opt/conda 
+rm /tmp/miniconda.sh 
+ln -s /opt/conda/etc/profile.d/conda.sh /etc/profile.d/conda.sh
+echo ". /opt/conda/etc/profile.d/conda.sh" >> ~/.bashrc 
+. /opt/conda/etc/profile.d/conda.sh 
+conda init bash
+conda config --set show_channel_urls true
+# 配置 .condarc 文件
+cat <<EOF > ~/.condarc
+channels:
+  - conda-forge
+  - bioconda
+  - pytorch
+  - pytorch-nightly
+  - nvidia
+  - defaults
+show_channel_urls: true
+EOF
\ No newline at end of file