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hotwa
2023-12-26 23:42:00 +08:00
parent 62c768bdeb
commit 2405c8ae7c
1 changed files with 24 additions and 29 deletions
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spawnerdockerfile/Dockerfile.base-notebook
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@@ -88,44 +88,34 @@ ln -sf /usr/share/zoneinfo/Asia/Shanghai /etc/localtime
echo 'Asia/Shanghai' > /etc/timezone
dpkg-reconfigure -f noninteractive tzdata
# 安装所需的软件包
apt-get install -y python3 python3-pip gcc g++ build-essential nodejs npm gdebi-core curl wget openssh-server vim lrzsz net-tools sudo git
apt-get install -y python3 python3-pip gcc g++ build-essential nodejs npm gdebi-core curl wget openssh-server vim lrzsz net-tools sudo git texlive-full
# 创建新用户
useradd -m -s /bin/bash ${CREATE_USER}
echo "${CREATE_USER}:${CREATE_USER_PASSWD}" | chpasswd
echo "${CREATE_USER} ALL=(ALL:ALL) NOPASSWD:ALL" >> /etc/sudoers
EOT
# jupyter-nbextension enable nglview --py --sys-prefix
# jupyter nbextension enable --py --sys-prefix widgetsnbextension
# conda install Rstudio
RUN <<EOT
#!/bin/bash
apt update -qq
apt install -y --no-install-recommends software-properties-common dirmngr
wget -qO- https://cloud.r-project.org/bin/linux/ubuntu/marutter_pubkey.asc | sudo tee -a /etc/apt/trusted.gpg.d/cran_ubuntu_key.asc
sudo add-apt-repository "deb https://cloud.r-project.org/bin/linux/ubuntu $(lsb_release -cs)-cran40/"
apt-get update
apt install --no-install-recommends r-base
sudo wget "https://download2.rstudio.org/server/$(lsb_release -cs)/amd64/rstudio-server-2023.06.1-524-amd64.deb" -O /tmp/rstudio-server.deb
sudo chmod +x /tmp/rstudio-server.deb
sudo gdebi -n /tmp/rstudio-server.deb
sudo rm -rf /tmp/rstudio-server.deb
EOT
RUN <<EOT
#!/bin/bash
# 安装micromamba
echo "1" | bash <(curl -s https://raw.githubusercontent.com/hotwa/MicroMamba_Installer/main/install.sh)
EOT
RUN <<EOT
#!/bin/bash
# 安装 Jupyter 和相关软件
npm install -g configurable-http-proxy
python3 -m pip install jupyterhub jupyterlab notebook radian pycurl jupyter-rsession-proxy ipykernel jupyterlab-language-pack-zh-CN jupyterlab-git jupyterlab-system-monitor jupyter_nbextensions_configurator jupyter_contrib_nbextensions jupyterlab_widgets jupyterlab-drawio jupyterlab-spreadsheet-editor jupyterlab-cell-flash jedi-language-server jupyterlab_code_formatter jupyterlab-spellchecker jupyterlab_vim nbresuse ipydrawio jedi ipympl black isort theme-darcula ipywidgets tensorboard jupyterlab_latex jupyter_bokeh autopep8 xeus-python jupyterlab-lsp python-lsp-server nglview dockerspawner jupyterhub-nativeauthenticator lckr_jupyterlab_variableinspector
EOT
RUN <<EOT
#!/bin/bash
# install rserver
apt update
apt update -qq
apt install -y --no-install-recommends software-properties-common dirmngr
wget -qO- https://cloud.r-project.org/bin/linux/ubuntu/marutter_pubkey.asc | tee -a /etc/apt/trusted.gpg.d/cran_ubuntu_key.asc
add-apt-repository "deb https://cloud.r-project.org/bin/linux/ubuntu $(lsb_release -cs)-cran40/"
apt-get update
apt install -y --no-install-recommends r-base
wget "https://download2.rstudio.org/server/$(lsb_release -cs)/amd64/rstudio-server-2023.06.1-524-amd64.deb" -O /tmp/rstudio-server.deb
chmod +x /tmp/rstudio-server.deb
gdebi -n /tmp/rstudio-server.deb
rm -rf /tmp/rstudio-server.deb
EOT
RUN <<EOT
#!/bin/bash
# 清理和减小镜像大小
@@ -133,9 +123,14 @@ apt-get clean
rm -rf /var/lib/apt/lists/* /tmp/* /var/tmp/* /usr/share/man/?? /usr/share/man/??_*
EOT
# Switch back to jovyan to avoid accidental container runs as root
USER ${NB_UID}
RUN <<EOT
#!/bin/bash
sudo chown -R ${NB_UID}:users /home/jovyan/micromamba
micromamba create -n plot -c conda-forge scienceplots autopep8 python=3 ipykernel pandas numpy matplotlib scipy seaborn orange3 -y
micromamba run -n plot pip install bamboolib
micromamba run -n plot -m ipykernel install --user --name="sciplot" --display-name="display_sciplot"
EOT
WORKDIR "${HOME}"