Files
bttoxin-pipeline/.gitignore
hotwa 8d11216481 docs: update README and add pixi-based tests
- Add property-based tests for PixiRunner
- Add HAN055.fna test data file
- Update README with pixi installation and usage guide
- Update .gitignore for pixi and test artifacts
- Update CLI to remove Docker-related arguments
2026-01-08 16:59:17 +08:00

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# Python
__pycache__/
*.py[cod]
*.so
.Python
venv/
*.egg-info/
.venv/
# Node
node_modules/
dist/
# System
.DS_Store
# Environment
.env
*.log
# Data
uploads/
results/
logs/
tests/test_data/genomes/*.fna
# IDE
.vscode/
.idea/
*.swp
# Test/Build artifacts
.pytest_cache/
.hypothesis/
htmlcov/
.coverage
# Pipeline outputs
runs/
tests/output/
tests/logs/
# Pixi (keep .pixi but ignore lock in subprojects)
.pixi/envs/
# uv lock (optional, can be committed for reproducibility)
# uv.lock
.kiro