963215de2d
- Add filter to skip .zip and .tar.gz files when creating result archive - Update CRISPR feature with CASFinder dependencies (hmmer, blast, vmatch, etc.) - Add install-casfinder task for macsydata installation - Remove obsolete CRISPR test files Co-Authored-By: Claude <noreply@anthropic.com>
31 lines
738 B
TOML
31 lines
738 B
TOML
[workspace]
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authors = ["zly <644706215@qq.com>"]
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channels = ["https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge", "https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/bioconda", "https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main"]
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name = "crispr_cas_analysis"
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platforms = ["linux-64"]
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version = "0.1.0"
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[dependencies]
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python = ">=3.10"
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wget = "*"
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curl = "*"
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git = "*"
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java-jdk = "*"
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parallel = "*"
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perl-app-cpanminus = "*"
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hmmer = "*"
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emboss = "*"
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blast = "*"
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perl-bioperl-core = "*"
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perl-xml-simple = "*"
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perl-digest-md5 = "*"
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vmatch = "*"
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muscle = "*"
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prodigal = "*"
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mamba = "*"
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macsyfinder = "==2.1.2"
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[tasks]
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install-casfinder = "macsydata install -u CASFinder==3.1.0"
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detect = "python scripts/detect_crispr.py"
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