700bdb8307
- Added Dockerfile and docker-compose.yml for BtToxin_Digger - Integrated external v5 BLAST database into the container image - Updated main docker-compose.yml to include the digger service - Updated documentation with database update instructions
29 lines
701 B
Docker
29 lines
701 B
Docker
# BtToxin Digger v5 容器镜像
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# 基于 pixi 管理的 conda 环境
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FROM ghcr.io/prefix-dev/pixi:latest
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WORKDIR /app
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# 复制 pixi 配置
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COPY pixi.toml .
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COPY pixi.lock .
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# 安装依赖
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RUN pixi install
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# 复制外部数据库替换默认数据库
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# 注意：必须在 pixi install 之后执行，且需要先清理原有目录以确保完全替换
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# 这一步假设构建上下文包含 external_dbs 目录
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RUN rm -rf /app/.pixi/envs/default/bin/BTTCMP_db/bt_toxin
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COPY external_dbs/bt_toxin /app/.pixi/envs/default/bin/BTTCMP_db/bt_toxin
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# 创建工作目录
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RUN mkdir -p /app/jobs /app/data
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# 暴露常用端口
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EXPOSE 9000
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# 默认命令
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CMD ["pixi", "run", "BtToxin_Digger", "--help"]
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