hotwa
ae4c6351d9
- Add pixi.toml with digger and pipeline environments - Implement PixiRunner class replacing DockerContainerManager - Add run_digger_stage.py for standalone digger execution - Update run_single_fna_pipeline.py to use PixiRunner - Remove docker dependency from pyproject.toml - Delete docker_client.py (no longer needed) BREAKING CHANGE: Docker is no longer required. Use 'pixi install' instead.
26 lines
568 B
TOML
26 lines
568 B
TOML
[build-system]
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requires = ["setuptools>=61.0", "wheel"]
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build-backend = "setuptools.build_meta"
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[project]
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name = "bttoxin-pipeline"
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version = "0.1.0"
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description = "BtToxin Digger + Shotter single-FNA pipeline with plotting and report"
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readme = "README.md"
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authors = [{name="Bttoxin Team"}]
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requires-python = ">=3.9"
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dependencies = [
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"pandas>=2.0.0",
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"matplotlib>=3.7.0",
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"seaborn>=0.12.2; python_version>='3.9'",
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]
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[project.scripts]
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bttoxin-run = "bttoxin.cli:main"
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[tool.setuptools]
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packages = ["bttoxin"]
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[tool.setuptools.package-data]
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bttoxin = []
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