hotwa
5883e13c56
- 新增 scripts/bttoxin_shoter.py：从 BPPRC 正样本 CSV 构建 name/亚家族/家族特异性索引， 解析 BtToxin_Digger All_Toxins.txt，计算 per-hit 权重并以 noisy-OR 合成菌株×目标目/物种分数， 输出 TSV/JSON；含 HMM 加成与配对毒素规则（Vip1/Vip2，Vpa/Vpb），other/unknown 桶。 - 新增端到端工具链： - scripts/run_single_fna_pipeline.py：Digger → Shotter → Plot → 打包 - scripts/plot_shotter.py：绘制热图并生成论文式/摘要式报告 - scripts/bttoxin_api.py 与 bttoxin/api.py：纯 Python API；bttoxin/cli.py 暴露 bttoxin-run - pyproject.toml：项目打包与 CLI 入口 - docs(README): 增加输入文件格式与结果解读，补充单目录写入方案 - chore(gitignore): 忽略 runs/ 与 tests/output - ci: 移除 .woodpecker/test.yml
27 lines
589 B
TOML
27 lines
589 B
TOML
[build-system]
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requires = ["setuptools>=61.0", "wheel"]
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build-backend = "setuptools.build_meta"
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[project]
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name = "bttoxin-pipeline"
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version = "0.1.0"
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description = "BtToxin Digger + Shotter single-FNA pipeline with plotting and report"
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readme = "README.md"
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authors = [{name="Bttoxin Team"}]
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requires-python = ">=3.9"
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dependencies = [
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"pandas>=2.0.0",
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"matplotlib>=3.7.0",
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"seaborn>=0.12.2; python_version>='3.9'",
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"docker>=6.1.0",
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]
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[project.scripts]
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bttoxin-run = "bttoxin.cli:main"
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[tool.setuptools]
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packages = ["bttoxin"]
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[tool.setuptools.package-data]
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bttoxin = []
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