hotwa
5883e13c56
- 新增 scripts/bttoxin_shoter.py：从 BPPRC 正样本 CSV 构建 name/亚家族/家族特异性索引， 解析 BtToxin_Digger All_Toxins.txt，计算 per-hit 权重并以 noisy-OR 合成菌株×目标目/物种分数， 输出 TSV/JSON；含 HMM 加成与配对毒素规则（Vip1/Vip2，Vpa/Vpb），other/unknown 桶。 - 新增端到端工具链： - scripts/run_single_fna_pipeline.py：Digger → Shotter → Plot → 打包 - scripts/plot_shotter.py：绘制热图并生成论文式/摘要式报告 - scripts/bttoxin_api.py 与 bttoxin/api.py：纯 Python API；bttoxin/cli.py 暴露 bttoxin-run - pyproject.toml：项目打包与 CLI 入口 - docs(README): 增加输入文件格式与结果解读，补充单目录写入方案 - chore(gitignore): 忽略 runs/ 与 tests/output - ci: 移除 .woodpecker/test.yml
34 lines
255 B
Plaintext
34 lines
255 B
Plaintext
# Python
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__pycache__/
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*.py[cod]
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*.so
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.Python
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venv/
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*.egg-info/
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# Node
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node_modules/
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dist/
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# System
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.DS_Store
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# Environment
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.env
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*.log
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# Data
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uploads/
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results/
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logs/
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tests/test_data/genomes/*.fna
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# IDE
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.vscode/
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.idea/
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*.swp
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.venv/
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runs/
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tests/output |