# BtToxin_Digger Docker 镜像
FROM continuumio/miniconda3:4.10.3

LABEL maintainer="your-email@example.com" \
      description="BtToxin_Digger for Pipeline" \
      version="1.0.10"

ENV LANG=C.UTF-8 \
    PATH=/opt/conda/envs/bttoxin/bin:$PATH \
    CONDA_DEFAULT_ENV=bttoxin \
    PYTHONUNBUFFERED=1

# 配置 conda
RUN conda config --add channels defaults && \
    conda config --add channels bioconda && \
    conda config --add channels conda-forge && \
    conda config --set channel_priority flexible && \
    conda install -n base -c conda-forge mamba -y

# 安装 BtToxin_Digger
RUN mamba install -y \
    python=3.7.10 \
    perl=5.26.2 && \
    mamba install -y \
    bttoxin_digger=1.0.10 && \
    conda clean -afy

# 安装额外工具
RUN apt-get update && apt-get install -y \
    curl wget jq git && \
    rm -rf /var/lib/apt/lists/*

# 创建工作目录
RUN mkdir -p /workspace/input /workspace/output /workspace/logs

WORKDIR /workspace

# 复制入口脚本
COPY entrypoint.sh /usr/local/bin/
RUN chmod +x /usr/local/bin/entrypoint.sh

HEALTHCHECK --interval=30s --timeout=10s --retries=3 \
    CMD BtToxin_Digger --version || exit 1

ENTRYPOINT ["/usr/local/bin/entrypoint.sh"]
CMD ["--help"]