# BtToxin Pipeline

Automated Bacillus thuringiensis toxin mining system with CI/CD integration.

## Quick Start

### Prerequisites

- Docker / Podman
- Python 3.10+
- Node.js 18+

### Development Setup
```bash
# 1. Clone and setup
git clone <your-repo>
cd bttoxin-pipeline

# 2. Install dependencies
cd backend && pip install -r requirements.txt
cd ../frontend && npm install

# 3. Start services
docker compose -f config/docker-compose.yml up -d

# 4. Run backend
cd backend
uvicorn app.main:app --reload

# 5. Run frontend
cd frontend
npm run dev
```

## Architecture

Frontend (Vue 3) → Backend (FastAPI) → Celery → Docker (BtToxin_Digger)
                         ↓
                   PostgreSQL + Redis
                         ↓
                      S3/MinIO

## Documentation

- [API Documentation](docs/api.md)
- [Deployment Guide](docs/deployment.md)
- [Usage Guide](docs/usage.md)

## License

MIT License