[workspace]
authors = ["zly <644706215@qq.com>"]
channels = ["https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge", "https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/bioconda", "https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main"]
name = "crispr_cas_analysis"
platforms = ["linux-64"]
version = "0.1.0"

[dependencies]
python = ">=3.10"
wget = "*"
curl = "*"
git = "*"
java-jdk = "*"
parallel = "*"
perl-app-cpanminus = "*"
hmmer = "*"
emboss = "*"
blast = "*"
perl-bioperl-core = "*"
perl-xml-simple = "*"
perl-digest-md5 = "*"
vmatch = "*"
muscle = "*"
prodigal = "*"
mamba = "*"
macsyfinder = "==2.1.2"

[tasks]
install-casfinder = "macsydata install -u CASFinder==3.1.0"
detect = "python scripts/detect_crispr.py"