6 Commits

Author	SHA1	Message	Date
zly	c9be0694ab	Update shotter math documentation with Logit Prior algorithm	2026-01-18 20:34:03 +08:00
zly	9835b6e341	feat(deploy): fix docker deployment and add backend i18n ... - Docker Deployment Fixes: - Switch base images to docker.m.daocloud.io to resolve registry 401 errors - Add Postgres and Redis services to docker-compose.traefik.yml - Fix frontend build: replace missing icons (Globe->Location, Chart->TrendCharts) - Fix frontend build: resolve pnpm CI/TTY issues and frozen lockfile errors - Add missing backend dependencies (sqlalchemy, psycopg2, redis-py, celery, docker-py) in pixi.toml - Ensure database tables are created on startup (lifespan event) - Backend Internationalization (i18n): - Add backend/app/core/i18n.py for locale handling - Update API endpoints (jobs, tasks, uploads, results) to return localized messages - Support 'Accept-Language' header (en/zh) - Documentation: - Update DOCKER_DEPLOYMENT.md with new architecture and troubleshooting - Update AGENTS.md with latest stack details and deployment steps - Update @fix_plan.md status Co-Authored-By: Claude <noreply@anthropic.com>	2026-01-14 12:38:54 +08:00
zly	89ed5cfa1a	feat(crispr): reserve CRISPR-Cas module infrastructure for future implementation\n\n- Add [feature.crispr] environment to pixi.toml (commented, ready to activate)\n- Create comprehensive CRISPR implementation plan document\n- Document 4-phase implementation roadmap:\n * Phase 1: CRISPR detection using CRISPRCasFinder\n * Phase 2: Spacer-toxin gene association analysis\n * Phase 3: Integration with shoter scoring (reserved parameters)\n * Phase 4: Enhanced visualization\n- Define data structures, API contracts, and usage examples\n- Document scientific background and testing strategy\n\nStatus: RESERVED - not yet implemented, all infrastructure prepared for future activation.\n\nCo-Authored-By: Claude <noreply@anthropic.com>	2026-01-13 23:55:12 +08:00
hotwa	3fc41a2924	docs: add mathematical formulation and algorithmic principles for BtToxin_Shotter toxicity prediction	2025-12-01 09:43:35 +08:00
hotwa	b80939f0ca	add math description	2025-11-22 10:09:35 +08:00
hotwa	82cfb13e50	add usage markdown file	2025-11-21 20:23:15 +08:00