lingyuzeng/bttoxin-pipeline
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7090676f464e35bac2aaccd8ab1cf0bfc00ce6d4
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5 Commits

Author SHA1 Message Date
zly
7090676f46 feat(backend): implement CRISPR-Cas API parameters and database schema 2026-01-14 15:47:35 +08:00
zly
9835b6e341 feat(deploy): fix docker deployment and add backend i18n 
- Docker Deployment Fixes:
  - Switch base images to docker.m.daocloud.io to resolve registry 401 errors
  - Add Postgres and Redis services to docker-compose.traefik.yml
  - Fix frontend build: replace missing icons (Globe->Location, Chart->TrendCharts)
  - Fix frontend build: resolve pnpm CI/TTY issues and frozen lockfile errors
  - Add missing backend dependencies (sqlalchemy, psycopg2, redis-py, celery, docker-py) in pixi.toml
  - Ensure database tables are created on startup (lifespan event)

- Backend Internationalization (i18n):
  - Add backend/app/core/i18n.py for locale handling
  - Update API endpoints (jobs, tasks, uploads, results) to return localized messages
  - Support 'Accept-Language' header (en/zh)

- Documentation:
  - Update DOCKER_DEPLOYMENT.md with new architecture and troubleshooting
  - Update AGENTS.md with latest stack details and deployment steps
  - Update @fix_plan.md status

Co-Authored-By: Claude <noreply@anthropic.com>
 2026-01-14 12:38:54 +08:00
zly
d4f0e27af8 feat(backend): add missing API endpoints, concurrency control, and queue management\n\n- Add /api/v1/tasks router for task management\n- Add DELETE endpoint for task deletion\n- Add GET /download endpoint for result bundling (tar.gz)\n- Add GET /queue endpoint for queue position queries\n- Create ConcurrencyManager service with Redis Semaphore (16 concurrent limit)\n- Add QUEUED status to JobStatus enum\n- Update Job model with queue_position, current_stage, progress_percent fields\n- Add scoring parameters (min_identity, min_coverage, etc.) to jobs API\n- Implement pipeline stages: digger -> shoter -> plots -> bundle\n- Add update_queue_positions Celery task for periodic queue updates\n- Clean up duplicate code in main.py\n\nCo-Authored-By: Claude <noreply@anthropic.com> 2026-01-13 23:41:15 +08:00
lingyuzeng
d71163df00 first add 2025-10-13 21:05:00 +08:00
lingyuzeng
c7744836e9 Initial commit: BtToxin Pipeline project structure 2025-10-13 19:22:56 +08:00