- Add filter to skip .zip and .tar.gz files when creating result archive
- Update CRISPR feature with CASFinder dependencies (hmmer, blast, vmatch, etc.)
- Add install-casfinder task for macsydata installation
- Remove obsolete CRISPR test files
Co-Authored-By: Claude <noreply@anthropic.com>
- Replace 'traefik-network' with 'frontend' in docker-compose.traefik.yml
- Replace 'traefik-network' with 'frontend' in switch-to-traefik.sh
- Replace 'your-main-network' with 'frontend' in DOCKER_DEPLOYMENT.md examples
- Ensure consistency across Docker configuration and documentation
Co-Authored-By: Claude <noreply@anthropic.com>