bttoxin-pipeline

lingyuzeng/bttoxin-pipeline

Fork 0

Commit Graph

Author	SHA1	Message	Date
zly	963215de2d	Fix(pipeline): prevent nested zip packaging and update CRISPR dependencies - Add filter to skip .zip and .tar.gz files when creating result archive - Update CRISPR feature with CASFinder dependencies (hmmer, blast, vmatch, etc.) - Add install-casfinder task for macsydata installation - Remove obsolete CRISPR test files Co-Authored-By: Claude <noreply@anthropic.com>	2026-01-28 20:06:41 +08:00
zly	c75c85c53b	Refactor: Unified pipeline execution, simplified UI, and fixed Docker config - Backend: Refactored tasks.py to directly invoke run_single_fna_pipeline.py for consistency. - Backend: Changed output format to ZIP and added auto-cleanup of intermediate files. - Backend: Fixed language parameter passing in API and tasks. - Frontend: Removed CRISPR Fusion UI elements from Submit and Monitor views. - Frontend: Implemented simulated progress bar for better UX. - Frontend: Restored One-click load button and added result file structure documentation. - Docker: Fixed critical Restarting loop by removing incorrect image directive in docker-compose.yml. - Docker: Optimized Dockerfile to correct .pixi environment path issues and prevent accidental deletion of frontend assets.	2026-01-20 20:25:25 +08:00
zly	fe353fc0bc	chore: 初始版本提交 - 简化架构 + 轮询改造 - 移除 Motia Streams 实时通信，改用 3 秒轮询 - 简化前端代码，移除冗余组件 - 简化后端架构，准备 FastAPI 重构 - 更新 pixi.toml 环境配置 - 保留 bttoxin_digger_v5_repro 作为参考文档 Co-Authored-By: Claude <noreply@anthropic.com>	2026-01-13 16:50:09 +08:00

Author

SHA1

Message

Date

zly

963215de2d

Fix(pipeline): prevent nested zip packaging and update CRISPR dependencies

- Add filter to skip .zip and .tar.gz files when creating result archive
- Update CRISPR feature with CASFinder dependencies (hmmer, blast, vmatch, etc.)
- Add install-casfinder task for macsydata installation
- Remove obsolete CRISPR test files

Co-Authored-By: Claude <noreply@anthropic.com>

2026-01-28 20:06:41 +08:00

zly

c75c85c53b

Refactor: Unified pipeline execution, simplified UI, and fixed Docker config

- Backend: Refactored tasks.py to directly invoke run_single_fna_pipeline.py for consistency.
- Backend: Changed output format to ZIP and added auto-cleanup of intermediate files.
- Backend: Fixed language parameter passing in API and tasks.
- Frontend: Removed CRISPR Fusion UI elements from Submit and Monitor views.
- Frontend: Implemented simulated progress bar for better UX.
- Frontend: Restored One-click load button and added result file structure documentation.
- Docker: Fixed critical Restarting loop by removing incorrect image directive in docker-compose.yml.
- Docker: Optimized Dockerfile to correct .pixi environment path issues and prevent accidental deletion of frontend assets.

2026-01-20 20:25:25 +08:00

zly

fe353fc0bc

chore: 初始版本提交 - 简化架构 + 轮询改造

- 移除 Motia Streams 实时通信，改用 3 秒轮询
- 简化前端代码，移除冗余组件
- 简化后端架构，准备 FastAPI 重构
- 更新 pixi.toml 环境配置
- 保留 bttoxin_digger_v5_repro 作为参考文档

Co-Authored-By: Claude <noreply@anthropic.com>

2026-01-13 16:50:09 +08:00

3 Commits