Refactor: Unified pipeline execution, simplified UI, and fixed Docker config

- Backend: Refactored tasks.py to directly invoke run_single_fna_pipeline.py for consistency.
- Backend: Changed output format to ZIP and added auto-cleanup of intermediate files.
- Backend: Fixed language parameter passing in API and tasks.
- Frontend: Removed CRISPR Fusion UI elements from Submit and Monitor views.
- Frontend: Implemented simulated progress bar for better UX.
- Frontend: Restored One-click load button and added result file structure documentation.
- Docker: Fixed critical Restarting loop by removing incorrect image directive in docker-compose.yml.
- Docker: Optimized Dockerfile to correct .pixi environment path issues and prevent accidental deletion of frontend assets.

scripts/pixi_runner.py

@@ -518,9 +518,15 @@ def build_shotter_command(
     min_coverage: float = 0.0,
     allow_unknown_families: bool = True,
     require_index_hit: bool = False,
+    # New Context Arguments
+    crispr_results: Optional[Path] = None,
+    crispr_fusion: bool = False,
+    context_bgc: Optional[Path] = None,
+    context_mobilome: Optional[Path] = None,
+    context_crispr: Optional[Path] = None,
 ) -> List[str]:
     """构建 Shotter 命令列表（使用 pipeline 环境）。
-    
+
     Args:
         pixi_project_dir: pixi.toml 所在目录
         script_path: bttoxin_shoter.py 脚本路径
@@ -531,7 +537,12 @@ def build_shotter_command(
         min_coverage: 最小 coverage 阈值
         allow_unknown_families: 是否允许未知家族
         require_index_hit: 是否要求索引命中
-        
+        crispr_results: CRISPR Fusion 结果路径
+        crispr_fusion: 是否启用 Fusion 分析
+        context_bgc: BGC 上下文结果路径
+        context_mobilome: Mobilome 上下文结果路径
+        context_crispr: CRISPR 检测结果路径 (for prior)
+
     Returns:
         命令参数列表，以 'pixi run -e pipeline python' 开头
     """
@@ -542,7 +553,7 @@ def build_shotter_command(
         "--all_toxins", str(all_toxins),
         "--output_dir", str(output_dir),
     ]
-    
+
     if min_identity and min_identity > 0:
         cmd += ["--min_identity", str(min_identity)]
     if min_coverage and min_coverage > 0:
@@ -551,7 +562,20 @@ def build_shotter_command(
         cmd += ["--disallow_unknown_families"]
     if require_index_hit:
         cmd += ["--require_index_hit"]
-    
+
+    # Context & CRISPR Args
+    if crispr_results:
+        cmd += ["--crispr_results", str(crispr_results)]
+    if crispr_fusion:
+        cmd += ["--crispr_fusion"]
+
+    if context_bgc:
+        cmd += ["--context_bgc", str(context_bgc)]
+    if context_mobilome:
+        cmd += ["--context_mobilome", str(context_mobilome)]
+    if context_crispr:
+        cmd += ["--context_crispr", str(context_crispr)]
+
     return cmd