lingyuzeng/bttoxin-pipeline
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Refactor: Unified pipeline execution, simplified UI, and fixed Docker config

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- Backend: Refactored tasks.py to directly invoke run_single_fna_pipeline.py for consistency.
- Backend: Changed output format to ZIP and added auto-cleanup of intermediate files.
- Backend: Fixed language parameter passing in API and tasks.
- Frontend: Removed CRISPR Fusion UI elements from Submit and Monitor views.
- Frontend: Implemented simulated progress bar for better UX.
- Frontend: Restored One-click load button and added result file structure documentation.
- Docker: Fixed critical Restarting loop by removing incorrect image directive in docker-compose.yml.
- Docker: Optimized Dockerfile to correct .pixi environment path issues and prevent accidental deletion of frontend assets.
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zly
2026-01-20 20:25:25 +08:00
parent 5067169b0b
commit c75c85c53b
134 changed files with 146457 additions and 996647 deletions
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README.md
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@@ -385,23 +385,20 @@ bttoxin-pipeline/
## Docker Deployment
For production deployment or easy setup without installing pixi/conda:
For production deployment:
```bash
# 1. Build and start the service
docker compose -f docker/compose/docker-compose.simple.yml up -d
# Build and start the service with Traefik integration
docker compose -f docker/compose/docker-compose.traefik.yml -p compose up -d --build
# 2. Access the services
# Frontend: http://localhost
# Backend API: http://localhost/api/docs
# Access: https://bttiaw.hzau.edu.cn
```
The Docker setup uses a single container with Nginx managing both frontend assets and backend API proxying.
The setup uses Traefik for SSL termination and routing. The backend API and frontend assets are served by the `bttoxin-pipeline` container.
**Available Docker configurations:**
- `docker/compose/docker-compose.yml` - Full configuration with multiple deployment options
- `docker/compose/docker-compose.simple.yml` - Simple single-container deployment (recommended for quick start)
- `docker/compose/docker-compose.traefik.yml` - Traefik-based deployment for production
- `docker/compose/docker-compose.traefik.yml` - Production deployment (Recommended)
- `docker/compose/docker-compose.simple.yml` - Simple deployment (No Traefik)
- `docker/compose/docker-compose.test.yml` - Test configuration
**Volume Mounts:**