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feat: add base_prokka tool and CRISPR-Cas analysis source code

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- Add base_prokka genome annotation tool with pixi config
- Add CRISPR-Cas analysis src (CRISPRCasFinder.pl, environment config)
- Add test data and documentation

Co-Authored-By: Claude <noreply@anthropic.com>
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zly
2026-01-28 20:31:00 +08:00
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tools/base_prokka/README.md Normal file
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prokka 这个环境，是进行基因组注释的，这是进行原核生物分析的第一步，运行这个后，会得到相应的基因注释文件；
后续的crispr鉴定，需要输入的文件有gff、faa文件，这些文件是从prokka的运行得到的；
后面bgc的鉴定，也需要prokka的结果文件。