feat(shotter): 实现 Shotter v1 活性评估与单 FNA 流程,新增 API/CLI/绘图与报告
- 新增 scripts/bttoxin_shoter.py:从 BPPRC 正样本 CSV 构建 name/亚家族/家族特异性索引, 解析 BtToxin_Digger All_Toxins.txt,计算 per-hit 权重并以 noisy-OR 合成菌株×目标目/物种分数, 输出 TSV/JSON;含 HMM 加成与配对毒素规则(Vip1/Vip2,Vpa/Vpb),other/unknown 桶。 - 新增端到端工具链: - scripts/run_single_fna_pipeline.py:Digger → Shotter → Plot → 打包 - scripts/plot_shotter.py:绘制热图并生成论文式/摘要式报告 - scripts/bttoxin_api.py 与 bttoxin/api.py:纯 Python API;bttoxin/cli.py 暴露 bttoxin-run - pyproject.toml:项目打包与 CLI 入口 - docs(README): 增加输入文件格式与结果解读,补充单目录写入方案 - chore(gitignore): 忽略 runs/ 与 tests/output - ci: 移除 .woodpecker/test.yml
This commit is contained in:
5
.gitignore
vendored
5
.gitignore
vendored
@@ -28,4 +28,7 @@ tests/test_data/genomes/*.fna
|
||||
.idea/
|
||||
*.swp
|
||||
|
||||
.venv/
|
||||
.venv/
|
||||
|
||||
runs/
|
||||
tests/output
|
||||
Reference in New Issue
Block a user