diff --git a/build_modeller.py b/build_modeller.py index 1fbba11..e7c4c74 100755 --- a/build_modeller.py +++ b/build_modeller.py @@ -91,9 +91,9 @@ class PDBModeler: log.verbose() - env2 = Environ() - env2.io.atom_files_directory = ['.'] - loop_model = LoopModel(env2, + env3 = Environ() + env3.io.atom_files_directory = ['.'] + loop_model = LoopModel(env3, alnfile=(self.outdir / 'alignment.ali').as_posix(), knowns=self.structure, sequence=self.sequence,