From 36020e9e34be78f228ba1272d633799abf48d8f4 Mon Sep 17 00:00:00 2001 From: hotwa Date: Fri, 12 Jan 2024 11:27:04 +0800 Subject: [PATCH] update log info --- modelbuilder.py | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/modelbuilder.py b/modelbuilder.py index d752064..051a968 100644 --- a/modelbuilder.py +++ b/modelbuilder.py @@ -89,7 +89,7 @@ class LoopModelBuilder: def split_chains(self) -> dict: split_dict = {} for chain_id in self.analyzer_instance.chain_id_list: - self.logger.info(f"Chain {chain_id} info: \n{self.analyzer_instance.extract_sequences(chain_id)}") + self.logger.info(f"Chain {chain_id} info(from file not fasta): \n{self.sequences[chain_id]}") chain_file = self.output_dir.joinpath(f"{self.analyzer_instance.pid}_{chain_id}.pdb") self.analyzer_instance.split_chain(chain_id).to_pdb(chain_file.as_posix()) split_dict[chain_id] = chain_file.read_text() @@ -112,7 +112,7 @@ class LoopModelBuilder: self.logger.info(f'Missing residues info for {self.pdb_file}:\n {self.missing_info}') split_dict = {} # split all chains for j in self.analyzer_instance.chain_id_list: - self.logger.info(f"Chain {j} info: \n{self.analyzer_instance.extract_sequences(j)}") + self.logger.info(f"Chain {j} info(from file not fasta): \n{self.sequences[j]}") fn = self.output_dir.joinpath(f"{self.analyzer_instance.pid}_{j}.pdb") self.analyzer_instance.split_chain(j).to_pdb(fn.as_posix()) split_dict[j]=fn.read_text()