first add

docker/README.md

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+```shell
+
+```
+
+```shell
+python run_alphafold.py \
+    --db_dir=/app/alphafold/alphafold3_database \
+    --json_path=/app/alphafold/alphafold_input.json \
+    --model_dir=/app/alphafold/models \
+    --output_dir=/app/alphafold/af_output \
+    --run_data_pipeline true \
+    --run_inference true
+```