Bootstrap: docker
From: mambaorg/micromamba:debian12-slim


%environment
    export ROOT_PASSWD="micromamba"
    export MAMBA_ENV_NAME="SIME"
    export PYTHON_VERSION="3.8"
    export HTTP_PROXY=""
    export HTTPS_PROXY=""


%post
    # 安装必要的软件
    apt update
    apt install -y vim git sudo bash-completion wget curl htop jq bzip2 npm unzip libz-dev libgomp1 libblas-dev liblapack-dev libzmq3-dev libjpeg-dev zlib1g-dev libpng-dev libfreetype6-dev libcairo2-dev pkg-config

    # 配置用户权限
    echo "mambauser ALL=(ALL) NOPASSWD: ALL" >> /etc/sudoers
    echo "mambauser:micromamba" | chpasswd

    # 切换到用户 mambauser 并配置环境
    su - mambauser -c 'bash -c "
    echo alias conda=micromamba >> ~/.bashrc
    echo alias mamba=micromamba >> ~/.bashrc
    micromamba create -n ${MAMBA_ENV_NAME} python=${PYTHON_VERSION} -y
    echo mamba activate ${MAMBA_ENV_NAME} >> ~/.bashrc
    git clone https://github.com/hotwa/SIME /app/SIME
    mkdir -p /app/SIME/LIBRARIES /app/SIME/uploads
    micromamba run -n ${MAMBA_ENV_NAME} pip install -r /app/SIME/requirements.txt
    micromamba run -n ${MAMBA_ENV_NAME} pip install ipython rdkit
    "'

%labels
    Author hotwa
    Version 1.0

%runscript
    exec micromamba run -n ${MAMBA_ENV_NAME} python /app/SIME/main.py